Data from: Ecological network inference from long-term presence-absence data

Sander EL, Wootton JT, Allesina S

Date Published: August 2, 2017

DOI: http://dx.doi.org/10.5061/dryad.8m11n

 

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Title Food web adjacency list for France river dataset
Downloaded 4 times
Description Adjacency list representing all feeding interactions for the France river dataset, as identified by a literature review of gut content analyses. 'Parent' column represents the source of the interaction. 'Child' column represents the target of the interaction. 'Sign' represents the effect of the Parent species on the Child species. Since feeding interactions are +/-, each predator-prey pair will be represented by two rows: one for the negative effect of predator on prey, and one for the positive effect of prey on predator.
Download Comte-adjlist.csv (5.872 Kb)
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Title List of species for the France river network dataset
Downloaded 3 times
Download ComteSpNames-final.txt (545 bytes)
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Title List of species for the Tatoosh middle intertidal dataset
Downloaded 4 times
Download tatoosh-control-exp-cv-spnames.txt (869 bytes)
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Title Presence-Absence data for Tatoosh middle intertidal
Downloaded 5 times
Description Presence-absence data for species in the Tatoosh middle intertidal (space-separated data frame). First column is a site identifier, second column is the census year, and all other columns are presence/absence for a species in a given site-year. Data for different sites are separated with a row of NAs.
Download tatoosh-site-year-all.txt (81.37 Kb)
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Title Trophic interaction adjacency list for Tatoosh data set
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Description Organized as for the France adjacency list, but with trophic (feeding) interactions for the Tatoosh data set.
Download tatoosh-trophic-adjlist.csv (21.73 Kb)
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Title Nontrophic interaction adjacency list for Tatoosh data set
Downloaded 6 times
Description Organized identically to the France adjacency list, but contains nontrophic (non-feeding) interactions for the Tatoosh data set.
Download tatoosh-nontrophic-adjlist.csv (16.43 Kb)
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When using this data, please cite the original publication:

Sander EL, Wootton JT, Allesina S (2017) Ecological Network Inference From Long-Term Presence-Absence Data. Scientific Reports 7(1): 7154. http://dx.doi.org/10.1038/s41598-017-07009-x

Additionally, please cite the Dryad data package:

Sander EL, Wootton JT, Allesina S (2017) Data from: Ecological network inference from long-term presence-absence data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8m11n
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