Data from: Post-fragmentation population structure in a cooperative breeding Afrotropical cloud forest bird: emergence of a source-sink population network

Husemann M, Cousseau L, Callens T, Matthysen E, Vangestel C, Hallmann C, Lens L

Date Published: February 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.8n5d7

 

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Title Phyllastrephus_cabanisi_microsatellites
Downloaded 14 times
Description Microsatellites data: 10 loci; RING = individual ID; FRAG: Forest fragment; PERIOD: 1 (1996-2000) and 2 (2006-2010); followed by 10 loci (one column per allele): Ase18, Indigo41, Ls1, Ls2, Mcyu4, Pca3, Pca4, Pfi04, Pfl54, WBSW2.
Download Phyllastrephus_cabanisi_microsatellites.csv (50.93 Kb)
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Title CMR_data
Downloaded 5 times
Description This folder contains all minimally necessary information to run the Jolly-Seber models with program MARK (White, Gary C., and Kenneth P. Burnham. Program MARK: survival estimation from populations of marked animals. Bird study 46.S1 (1999): S120-S139) as mentioned in the main paper. There are 10 input files for program MARK, two for each of the five fragments (MB:Mbololo,NG:Ngangao,FU:Fururu,ND:Ndiwenyi,CH:Chawia) that represent periods 1 & 2 respectively. Additionally, another 10 auxiliary datasets are provided to adjust for unequal interval lengths between sampling occasions within each fragment (see program MARK documentation). Each input data file is a tab-separated text file (.txt) in which the first column represents an encounter history of an individual, for a given fragment and time period (columns 2 and 3). Each auxiliary data file is a tab-separated text file (.txt) with interval id, starting date of interval, interval length (in days) and interval length (in fraction of a year).
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Title PG_genepop9loc
Downloaded 24 times
Description This genepop file contains the genetic data (9 microsatellites) used in most genetic analyses: Effective sizes, STRUCTURE, DiyABC, Bottleneck, BIMr (adults). The file is divided by forest fragments (MB:Mbololo,NG:Ngangao,FU:Fururu,ND:Ndiwenyi,CH:Chawia) and period (1 and 2).
Download PG_genepop9loc.txt (27.44 Kb)
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Title PG_BIMr_nestlings_fledglings
Downloaded 10 times
Description Dataset used to estimate recent migration rates (BIMr software: Faubet & Gaggiotti 2008) from nestlings and recent fledglings (second period only).
Download PG_BIMr_nestlings_fledglings.txt (12.93 Kb)
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When using this data, please cite the original publication:

Husemann M, Cousseau L, Callens T, Matthysen E, Vangestel C, Hallmann C, Lens L (2015) Post-fragmentation population structure in a cooperative breeding Afrotropical cloud forest bird: emergence of a source-sink population network. Molecular Ecology 24(6): 1172-1187. http://dx.doi.org/10.1111/mec.13105

Additionally, please cite the Dryad data package:

Husemann M, Cousseau L, Callens T, Matthysen E, Vangestel C, Hallmann C, Lens L (2015) Data from: Post-fragmentation population structure in a cooperative breeding Afrotropical cloud forest bird: emergence of a source-sink population network. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8n5d7
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