Data from: Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas

Thorell K, Yahara K, Berthenet E, Lawson DJ, Mikhail J, Kato I, Mendez A, Rizzato C, Bravo MM, Suzuki R, Yamaoka Y, Torres J, Sheppard SK, Falush D

Date Published: February 24, 2017

DOI: http://dx.doi.org/10.5061/dryad.8qp4n

 

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Title BIGSdb gene-by-gene alignment, fasta format
Downloaded 12 times
Description This is a fasta format gene-by-gene alignment of all the genomes included in the study to all loci in the H. pylori reference genome 26695. The loci are subsequently concatenated into one entry per genome.
Download BIGSdb_gene-by-gene_alignment.fasta.gz (183.4 Mb)
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Title BIGSdb gene-by-gene alignment, xmfa format
Downloaded 12 times
Description This is an extended fasta (xmfa) format gene-by-gene alignment of all the genomes included in the study to all loci in the H. pylori reference genome 26695.
Download BIGSdb_gene-by-gene_alignment.xmfa.gz (38.01 Mb)
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Title Gzipped tar archive of contig files
Downloaded 11 times
Description This tarball contains all 402 draft- and complete genomes compared within this study.
Download contigs.tar.gz (202.4 Mb)
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When using this data, please cite the original publication:

Thorell K, Yahara K, Berthenet E, Lawson DJ, Mikhail J, Kato I, Mendez A, Rizzato C, Bravo MM, Suzuki R, Yamaoka Y, Torres J, Sheppard SK, Falush D (2017) Data from: Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas. PLOS Genetics 13(2): e1006546. http://dx.doi.org/10.1371/journal.pgen.1006546

Additionally, please cite the Dryad data package:

Thorell K, Yahara K, Berthenet E, Lawson DJ, Mikhail J, Kato I, Mendez A, Rizzato C, Bravo MM, Suzuki R, Yamaoka Y, Torres J, Sheppard SK, Falush D (2017) Data from: Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8qp4n
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