Data from: Glaciations, gradients, and geography: multiple drivers of diversification of bush frogs in the Western Ghats Escarpment

Vijayakumar SP, Menezes RC, Jayarajan A, Shanker K

Date Published: September 1, 2016

DOI: http://dx.doi.org/10.5061/dryad.8r3v0

 

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Title TIme tree of bush frogs
Downloaded 19 times
Description A dated tree of bush frogs (Raorchestes) inferred in BEAST. See methods and supplementary information for details. The file can be read in FigTree for node level information on divergence times and 95% HPD.
Download 89TAX_PRIOR6_R1R2_NAMESUPDATED.tre (98.33 Kb)
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Title Pruned Time tree of bush frogs (Raorchestes)
Downloaded 13 times
Description A pruned version of the time tree of bush frogs, Raorchestes, from Western Ghats, used in the ancestral reconstruction of elevation mid-points. Contains 65 lineages. The tree was inferred in BEAST.
Download 102TAX_PRIOR4BD_R1R2_trimmed_65lineages_N...ED.nex (6.699 Kb)
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Title Raorchestes_Midpoint_elevation_datafile
Downloaded 18 times
Description Contains, elevation mid-point (column-Elevation_mid)for 65 Lineages of Raorchestes, sample size(N), Coded discrete sates used in the reconstruction. Column - Three_states_mid (0- 0 to 900, 1- 901 to 1800, 3 - 1801 - 2700 m). Column - Five_states_mid (0 - 401 to 900, 1- 901 - 1200, 2- 1201 - 1800, 3- 1801 - 2200, 4 - 2201 - 2700). Note no mid-points in the 0-401 m category. Use Likelihood method, in Mequite, to replicate the analyses. Associated pruned time tree used in the reconstruction is provided as a separate file.
Download Raorchestes_Midpoint_elevation_datafile.csv (2.274 Kb)
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Title Raorchestes_Area_datafile
Downloaded 9 times
Description Distribution of Raorchestes lineages across broad areas used in the ancestral area reconstruction. A - Sri Lanka, B - South of Palghat Gap, C - North of Palghat Gap and eastern regions, D - North-east part of India and SE Asia. Use the 89TAX_PRIOR6_R1R2_NAMESUPDATED.tre for analyses. Need to be pruned before analyses.
Download Raorchestes_Area_datafile.csv (2.407 Kb)
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When using this data, please cite the original publication:

Vijayakumar SP, Menezes RC, Jayarajan A, Shanker K (2016) Glaciations, gradients, and geography: multiple drivers of diversification of bush frogs in the Western Ghats Escarpment. Proceedings of the Royal Society B 283(1836): 20161011. http://dx.doi.org/10.1098/rspb.2016.1011

Additionally, please cite the Dryad data package:

Vijayakumar SP, Menezes RC, Jayarajan A, Shanker K (2016) Data from: Glaciations, gradients, and geography: multiple drivers of diversification of bush frogs in the Western Ghats Escarpment. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8r3v0
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