Data from: Here and there, but not everywhere: repeated loss of uncoupling protein 1 in amniotes

McGaugh S, Schwartz TS

Date Published: November 21, 2016

DOI: http://dx.doi.org/10.5061/dryad.934fg

 

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Title Supplemental_File1_Methods_Results_Figures
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Description Detailed description of methods and results including figures S1 and S2.
Download Supplemental_File1_Methods_Results_Figures.docx (2.836 Mb)
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Title Supplemental_File2_Tables
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Description This is a summary of results for each species analyzed in our study, including presence of ucp1 annotation, synteny analysis, and blasting of raw reads. This table also includes the ftp links to the sequence data used for each species. Species highlighted in purple had no evidence of ucp1 in Ensembl and were investigated further through synteny analysis and BLAST search of their raw data.
Download Supplemental_File2_TablesSM.xlsx (2.667 Mb)
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Title Supplemental_File3_BlastQUERY_Synteny
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Description The exon sequences for ucp1 and six flanking genes used in the BLASTn for synteny analysis.
Download Supplemental_File3_BlastQUERY_Synteny.txt (149.3 Kb)
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Title Supplemental_File4_Protein_UCP1_Query_for_TBLASTN
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Description The UCP1 protein sequences used for tBLASTn against the genomes.
Download Supplemental_File4_Protein_UCP1_Query_for...TN.txt (2.492 Kb)
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Title Supplemental_File5_BlastQUERY_for_raw_reads_mammals
Downloaded 3 times
Description The ucp1 gene sequences used for BLASTn against the raw sequence data for reptiles.
Download Supplemental_File5_BlastQUERY_for_raw_rea...ls.txt (5.495 Kb)
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Title Supplemental_File6_BlastQUERY_for_raw_reads_reptiles_birds
Downloaded 2 times
Description The ucp1 gene sequences used for BLASTn against the raw sequence data for reptiles.
Download Supplemental_File6_BlastQUERY_for_raw_rea...ds.txt (6.557 Kb)
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When using this data, please cite the original publication:

McGaugh S, Schwartz TS (2017) Here and there, but not everywhere: repeated loss of uncoupling protein 1 in amniotes. Biology Letters 13(1): 20160749. http://dx.doi.org/10.1098/rsbl.2016.0749

Additionally, please cite the Dryad data package:

McGaugh S, Schwartz TS (2017) Data from: Here and there, but not everywhere: repeated loss of uncoupling protein 1 in amniotes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.934fg
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