Data from: Lights out: the evolution of bacterial bioluminescence in Loliginidae

Anderson FE, Bergman A, Cheng SH, Pankey MS, Valinassab T

Date Published: July 8, 2013

DOI: http://dx.doi.org/10.5061/dryad.93s3n

 

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Title Loliolini cox1 + rrnL NEXUS file (Mesquite format)
Downloaded 26 times
Description Concatenated cytochrome c oxidase subunit I (cox1) + large mitochondrial ribosomal RNA subunit (rrnL) data set comprising GenBank sequences and sequences collected for this study. Mesquite-format NEXUS file, used for phylogeny estimation in Garli, RAxML and MrBayes; includes best-known likelihood tree found using partitioned ML analysis in Garli.
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Title Loliolini cox1 + rrnL NEXUS file (simplified)
Downloaded 25 times
Description Simplified NEXUS file of concatenated cox1/rrnL data for various loliginid squid, including gene boundaries and inferred codon positions for cox1.
Download LolioliniCOI16S.simple.nex (446.9 Kb)
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Title Loliolini cox1 + rrnL NEXUS file (reduced for *BEAST analysis)
Downloaded 19 times
Description Reduced concatenated cytochrome c oxidase subunit I (cox1) + large mitochondrial ribosomal RNA subunit (rrnL) data file used for *BEAST species-tree analysis
Download Loliolini.speciestree.nex (251.8 Kb)
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Title Mapping file for *BEAST analyses of Loliolini cox1 + rrnL data set (tab-delimited text)
Downloaded 27 times
Description Species-OTU mapping file used in conjunction with the reduced concatenated cox1 + rrnL data file for *BEAST species-tree analysis
Download Loliolini.mapping.txt (1.997 Kb)
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When using this data, please cite the original publication:

Anderson FE, Bergman A, Cheng SH, Pankey MS, Valinassab T (2013) Lights out: the evolution of bacterial bioluminescence in Loliginidae. Hydrobiologia 725(1): 189-203. http://dx.doi.org/10.1007/s10750-013-1599-1

Additionally, please cite the Dryad data package:

Anderson FE, Bergman A, Cheng SH, Pankey MS, Valinassab T (2013) Data from: Lights out: the evolution of bacterial bioluminescence in Loliginidae. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.93s3n
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