Data from: Drift, not selection, shapes toll-like receptor variation among oceanic island populations

González-Quevedo C, Spurgin LG, Illera JC, Richardson DS

Date Published: October 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.9432p

 

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Title TLR1LA_All Aberthelotii
Downloaded 10 times
Description This fasta file contains the TLR1LA genotypes of all Berthelot's pipits sampled
Download TLR1LA_All Aberthelotii.fas (153.4 Kb)
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Title TLR1LA_All Acampestris
Downloaded 5 times
Description This file contains all the TLR1LA genotypes of tawny pipits sampled
Download TLR1LA_All Acampestris.fas (14.55 Kb)
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Title TLR1LB_All Aberthelotii
Downloaded 5 times
Description This file contains the TLR1LB genotypes of all Berthelot's pipits sampled
Download TLR1LB_All Aberthelotii.fas (147.1 Kb)
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Title TLR1LB_All Acampestris
Downloaded 5 times
Description This file contains the TLR1LB genotypes of all tawny pipits sampled.
Download TLR1LB_All Acampestris.fas (12.34 Kb)
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Title TLR3_All Aberthelotii
Downloaded 5 times
Description This file contains the TLR3 genotypes of all Berthelot's pipits sampled
Download TLR3_All Aberthelotii.fas (401.7 Kb)
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Title TLR3_All Acampestris
Downloaded 6 times
Description This file contains the TLR3 genotypes of all tawny pipits sampled
Download TLR3_All Acampestris.fas (14.31 Kb)
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Title TLR4_All Aberthelotii
Downloaded 6 times
Description This file contains the TLR4 genotypes of all Berthelot's pipits sampled
Download TLR4_All Aberthelotii.fas (256.6 Kb)
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Title TLR4 _All Acampestris
Downloaded 7 times
Description This file contains the TLR4 genotypes of all tawny pipits sampled
Download TLR4 _All Acampestris.fas (8.292 Kb)
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Title TLR21_All Aberthelotii
Downloaded 4 times
Description This file contains the TLR21 genotypes of all Berthelot's pipits sampled
Download TLR21_All Aberthelotii.fas (93.60 Kb)
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Title TLR21_All Acampestris
Downloaded 4 times
Description This file contains the TLR21 genotypes of all tawny pipits sampled
Download TLR21_All Acampestris.txt (7.8 Kb)
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Title Pipit TLR FST
Downloaded 4 times
Description This file contains the pairwise Fst calculated for TLRs
Download Pipit TLR FST.csv (3.914 Kb)
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Title Pipit pairwise FST per msat locus
Downloaded 3 times
Description This file contains the pairwise Fst calculated with microsatellites
Download Pipit pairwise FST per msat locus.csv (39.57 Kb)
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Title code to get pairwise bottleneck distance between islands
Downloaded 6 times
Description This file contains an R code to get pairwise bottleneck distances
Download code to get pairwise bottleneck distance ...ds.txt (852 bytes)
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Title CO1_Anthus_aligned
Downloaded 4 times
Description This file contains the alignment of the Cytochrome Oxidase subunit 1 haplotypes from Anthus campestris and Anthus berthelotii
Download CO1_Anthus_aligned.fas (18.06 Kb)
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Title TLR1LA_All_genotypes2015
Downloaded 13 times
Description This is the output file with Phase results for TLR1LA in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
Download TLR1LA_All_genotypes2015.fas (20.43 Kb)
Download README.docx (13.10 Kb)
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Title TLR1LB_All_genotypes2015
Downloaded 9 times
Description This is the output file with Phase results for TLR1LB in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
Download TLR1LB_All_genotypes2015.fas (21.70 Kb)
Download README.docx (13.10 Kb)
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Title TLR3_All_genotypes2015
Downloaded 13 times
Description This is the output file with Phase results for TLR3 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
Download TLR3_All_genotypes2015.fas (47.57 Kb)
Download README.docx (13.10 Kb)
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Title TLR4_All_genotypes2015
Downloaded 13 times
Description This is the output file with Phase results for TLR4 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
Download TLR4_All_genotypes2015.fas (36.68 Kb)
Download README.docx (13.10 Kb)
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Title TLR21_All_genotypes2015
Downloaded 14 times
Description This is the output file with Phase results for TLR21 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
Download TLR21_All_genotypes2015.fas (14.02 Kb)
Download README.docx (13.10 Kb)
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Title TLR1LA_ TREE SESSION 2015
Downloaded 3 times
Description Tree file for the TLR1LA phylogeny
Download TLR1LA_ TREE SESSION 2015.mts (132.9 Kb)
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Title TLR1LB_tree session 2015
Downloaded 3 times
Description Tree file for the TLR1LB phylogeny
Download TLR1LB_tree session 2015.mts (74.45 Kb)
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Title TLR3_TREE SESSION 2015
Downloaded 2 times
Description Tree file for the TLR3 phylogeny
Download TLR3_TREE SESSION 2015.mts (44.05 Kb)
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Title TLR4_new tree session
Downloaded 4 times
Description Tree file for the TLR4 phylogeny
Download TLR4_new tree session.mts (51.71 Kb)
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Title TLR21_new tree session
Downloaded 4 times
Description Tree file for the TLR21 phylogeny
Download TLR21_new tree session.mts (22.92 Kb)
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When using this data, please cite the original publication:

González-Quevedo C, Spurgin LG, Illera JC, Richardson DS (2015) Drift, not selection, shapes toll-like receptor variation among oceanic island populations. Molecular Ecology 24(23): 5852–5863. http://dx.doi.org/10.1111/mec.13437

Additionally, please cite the Dryad data package:

González-Quevedo C, Spurgin LG, Illera JC, Richardson DS (2015) Data from: Drift, not selection, shapes toll-like receptor variation among oceanic island populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.9432p
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