Data from: Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data

Robinson KM, Crabtree J, Mattick JSA, Anderson KE, Dunning Hotopp JC

Date Published: January 25, 2017

DOI: http://dx.doi.org/10.5061/dryad.96584

 

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Title Additional file 1: Metadata and taxonomic assignments for TCGA bacterial read pairs
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Description Summary of TCGA data by bacterial read pair. This file is a tab-delimited text file of all TCGA read pairs and their corresponding metadata and bacterial taxonomic assignments from the first release of TCGA data. Comments are denoted by a #. Abbreviations for sequencing center and tissue source site are as follows: BCGSC—British Columbia Genome Sequencing Center; Broad—The Broad Institute of MIT and Harvard; Fox Chase—Fox Chase Cancer Center; MSKCC—Memorial Sloan Kettering Cancer Center; UCSF—University of California San Francisco; UNC—University of North Carolina; Wash Univ St. Louis—Washington University in St. Louis.
Download microview-v1-all-reads-comment-header.txt.gz (271.7 Mb)
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When using this data, please cite the original publication:

Robinson KM, Crabtree J, Mattick JSA, Anderson KE, Dunning Hotopp JC (2017) Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data. Microbiome 5: 9. http://dx.doi.org/10.1186/s40168-016-0224-8

Additionally, please cite the Dryad data package:

Robinson KM, Crabtree J, Mattick JSA, Anderson KE, Dunning Hotopp JC (2017) Data from: Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.96584
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