Data from: Rapid evolution of a native species following invasion by a congener

Stuart YE, Campbell TS, Hohenlohe PA, Reynolds RG, Revell LJ, Losos JB

Date Published: December 12, 2014

DOI: http://dx.doi.org/10.5061/dryad.96g44

 

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Title Exp.PerchHeight_19951998_Data.Acarolinensis
Downloaded 22 times
Description This .Rdata file contains an object (Exp.PerchHeight19951998_Data_Acarolinensis) that contains perch height (cm), island (small, medium, or large), sex, and treatment (0=control, 1=treatment) information for Anolis carolinensis. These data were used to create Figure 1. Mixed models R-code for two-way interaction (package nlme) which includes the pre introduction data mixed.phl.2way.b <- lme(sqrt(PH)~ as.factor(Treat)*as.factor(Event) + Sex, random =~Sex | as.factor(Island), na.action=na.omit) Mixed models R-code for two-way interaction (package nlme) which does not include the pre introduction data mixed.phl.2way.no.pre <- lme(sqrt(PH)~ as.factor(Treat)*as.factor(Event) + Sex, random =~Sex | as.factor(Island), na.action=na.omit)
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Title Exp.PerchHeight_19951998_Data_Asagrei
Downloaded 6 times
Description This .Rdata file contains an object (“x”) that contains perch height (cm), island/treatment (small treatment, medium treatment, or large treatment), and sex (0=f, 1=m) information for Anolis sagrei. These data were used to create Figure S1.
Download Exp.PerchHeight_19951998_Data_Asagrei.Rdata (3.168 Kb)
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Title CommonGarden.ToepadLamellae_Data_Acarolinensis
Downloaded 14 times
Description This .Rdata file contains an object “data.red” which contains the common garden A. carolinensis toepad area and lamella number data used to create Figure 3. The columns are cge.id (hatchling id), dam.hatch.id (hatchling birth mother and date), dam id (adult, wildcaught), island, sagrei present (0=no, 1=yes), ar.av.mm (average toepad area), lam.av.areacount (average lamella number at area scan), hatch.svl.at.area (hatchling svl at area scan), hatch.mass.at.area, sex.at.area, dam.mass (mass of mother at wild capture), dam.svl (at wild capture), hatch.svl.at.hatch (hatchling svl upon hatching from the egg), and hatch.mass.at.hatch. Mixed models R-code for toepad area and lamella number in 2010 Toepad area x <- lmeControl(maxIter=1000, msMaxIter=1000, niterEM=1000) model.area.1 <- lme(ar.av.mm~sag.present + hatch.svl.at.area, random = ~hatch.svl.at.area|island, control = x, na.action=na.omit) Lamella number x <- lmeControl(maxIter=1000, msMaxIter=1000, niterEM=1000) model.lam.1 <- lme(lam.av.areacount~sag.present + hatch.svl.at.area, random = ~hatch.svl.at.area|island, control = x, na.action=na.omit)
Download CommonGarden.ToepadLamellae_Data_Acaroline...Rdata (2.681 Kb)
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Title Comp.PerchHeight_2010_Data_Acarolinensis
Downloaded 4 times
Description This .Rdata file contains an object “Eco.Ac.red” which contains the A. carolinensis perch height data used to create Figure S2 and to test for perch height shifts in the 2010 comparative study. Column headers are island, sagrei.present (1=yes, 0=no), sex, phl (lizard perch height) and pdia (lizard perch diameter). Mixed models R-code for perch height in 2010 mixed.phl.red <-lme(sqrt(phl) ~ sagrei.present + sex, random = ~sex|island, na.action = na.omit)
Download Comp.PerchHeight_2010_Data_Acarolinensis.Rdata (6.183 Kb)
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Title Comp.PerchHeight_2010_Data_Asagrei
Downloaded 4 times
Description This .Rdata file contains an object “Eco.As.red” which contains the A. sagrei perch height data used to create Figure S2. Column headers are island, sagrei.present (1=yes, 0=no), sex, phl (lizard perch height) and pdia (lizard perch diameter).
Download Comp.PerchHeight_2010_Data_Asagrei.Rdata (897 bytes)
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Title HabitatSurvey
Downloaded 4 times
Description This Rdata file contains an object (“x”) which contains the point-quarter habitat survey data from which species richness and tree heights were obtained. Table S7.
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Title Comp.ToepadLamellae_2010_Data_Acarolinensis
Downloaded 6 times
Description This .Rdata file contains an object “lam.mf.good.av.red” which contains the wildcaught A. carolinensis toepad area and lamella number data used to create Figure 3, analyze morphological evolution, and calculate haldanes. The columns are island, presence of sagrei (0=no, 1=yes), snout-vent length, sex, count.av (average lamella count across right and left 4th hindtoes) and area.mm2.av (average toepad area in mm2 across right and left 4th hindtoes). Mixed models R-code for toepad area and lamella number in 2010 Toepad area x <- lmeControl(maxIter=100, msMaxIter=100, niterEM=100) model.area.mf222 <- lme(area.mm2.av~sagrei.present + sex + svl, random = ~sex + svl | island, control = x) Lamella number x <- lmeControl(maxIter=100, msMaxIter=100, niterEM=100) model.lam.mf <- lme(count.av~sagrei.present + sex + svl, random = ~sex + svl | island, control = x)
Download Comp.ToepadLamellae_2010_Data_Acarolinensis.Rdata (6.336 Kb)
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Title Macrohabitat
Downloaded 3 times
Description This Rdata file contains an object “macrohabitat” that contains island, treatment (2=sagrei invaded, 1 = sagrei not invaded), closest distance to the mainland, Total area (meters squared), vegetated area (meters squared), and vegetated area without mangrove (meters squared). Used for Table S7.
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Title Species.Richness
Downloaded 3 times
Description This Rdata file contains an object “richness” that contains abundance counts for each major species collected during random habitat surveys (HabitatSurvey.Rdata). Species richness was calculated from this matrix. Used for Table S7. Blk.mangrove = Black Mangrove (Avicennia germinans) Buttonwood = Conocarpus erectus Cedar = Eastern Red Cedar (Juniperus virginiana) Cpalm = Cabbage Palm (Sabal palmetto) Ox-eye = Sea Ox-eye Daisy (Borrichia frutescens) Pepper = Brazilian Pepper (Schinus terebinthifolius) Vacc = Vaccinium sp. Wax-myrt = Wax Myrtle (Morella cerifera) Wt. mangrove = (Laguncularia racemosa)
Download Species.Richness.Rdata (514 bytes)
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Title Stuartetal2014_dryad.tar
Downloaded 6 times
Description This gzipped folder contains 4 files: README.txt with a description of file format and contents; Stuartetal2014_metadata.xlsx with metadata in Microsoft Excel format; calls_allSNPs.txt - genotypes for unfiltered SNPs; and SNPs_min150_minMAF05_trimmed_1408730.nex - genotypes for filtered SNPs in nexus format.
Download Stuartetal2014_dryad.tar.gz (51.73 Mb)
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When using this data, please cite the original publication:

Stuart YE, Campbell TS, Hohenlohe PA, Reynolds RG, Revell LJ, Losos JB (2014) Rapid evolution of a native species following invasion by a congener. Science 346(6208): 463-466. http://dx.doi.org/10.1126/science.1257008

Additionally, please cite the Dryad data package:

Stuart YE, Campbell TS, Hohenlohe PA, Reynolds RG, Revell LJ, Losos JB (2014) Data from: Rapid evolution of a native species following invasion by a congener. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.96g44
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