Data from: Distinct sources of gene flow produce contrasting population genetic dynamics at different range boundaries of a Choristoneura budworm

Blackburn GS, Brunet BMT, Muirhead K, Cusson M, Béliveau C, Levesque RC, Lumley LM, Sperling FAH

Date Published: October 27, 2017

DOI: https://doi.org/10.5061/dryad.9c50s

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Title all_samples
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Description Genotypes for all samples in the study Blackburn et al 2017.
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Title pcadapt_in
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Description PCADAPT input file.
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Title hiest_bie&occ&fum_parent_in
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Description HIEST parent input file.
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Title hiest_bie-occ-fum_hybridzone_in
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Description HIEST hybrid zone input file.
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Title bgc_bie_parent_in
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Description BGC bie parent input file.
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Title bgc_occ_parent_in
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Description BGC occ parent input file.
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Title bgc_fum_parent_in
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Description BGC fum parent input file.
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Title bgc_bie-occ_hybridzone_in
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Description BGC bie-occ hybrid zone input file.
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Title bgc_bie-fum_hybridzone_in
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Description BGC bie-fum hybrid zone input file.
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Title bayescan_bie&occ_in
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Description BAYESCAN bie & occ parent input file.
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Title bayescan_bie&fum_in
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Description BAYESCAN bie & fum parent input file.
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Title blast_bayescan&bgcoutlier_outlier&10kbflanks_in
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Description BLAST and BLAST2GO input file.
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Title parent_samplelist_bie_pcadapt
Downloaded 2 times
Description Sample list of bie parent population, determined using PCADAPT.
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Title parent_samplelist_occ_pcadapt
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Description Sample list of occ parent population, determined using PCADAPT.
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Title parent_samplelist_fum_pcadapt
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Description Sample list of fum parent population, determined using PCADAPT.
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Title hybridzone_samplelist_bie-occ-fum_pcadapt
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Description Sample list of bie-occ-fum hybrid populations, determined using PCADAPT.
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Title hybridzone_samplelist_bie-occ_pcadapt&hiest
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Description Sample list of bie-occ hybrid zone, determined using PCADAPT and HIEST.
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Title hybridzone_samplelist_bie-fum_pcadapt&hiest
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Description Sample list of bie-fum hybrid zone, determined using PCADAPT and HIEST.
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Title bayescan_bie&occ_locuslist
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Description BAYESCAN bie and occ parent locus list.
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Title bayescan_bie&fum_locuslist
Downloaded 2 times
Description BAYESCAN bie and fum parent locus list.
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Title blast_bayescan&bgcoutlier_outlierstatus
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Description BLAST: Outlier status of loci employed in gene function analyses.
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Title blast_bayescan&bgcoutlier_seqinfo
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Description BLAST: Sequence information of flanking regions surrounding loci employed in gene function analyses.
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Title h_allsnp_genind
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Description SNP data in genind format for heterozygosity analysis in R package ADEGENET.
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Title h_pooled_bie&fumparents_in
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Description ADEGENET pooled bie and fum parent SNP data for heterozygosity analysis.
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Title h_pooled_bie&occ&fumparents_in
Downloaded 2 times
Description ADEGENET pooled bie, occ, and fum parent SNP data for heterozygosity analysis.
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Title h_pooled_bie&occparents_in
Downloaded 2 times
Description ADEGENET pooled bie and occ parent SNP data for heterozygosity analysis.
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Title h_separate_populations_in
Downloaded 1 time
Description ADEGENET separate population SNP data for heterozygosity analysis.
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Title ld_bfoutliers_bfadvhybrids_in
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Description LD analysis bie-fum advanced hybrids genotypes for bie-fum gene flow outliers.
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Title ld_bfoutliers_boadvhybrids_in
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Description LD analysis bie-occ advanced hybrids genotypes for bie-fum gene flow outliers.
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Title ld_bfoutliers_bparents_in
Downloaded 1 time
Description LD analysis bie parents genotypes for bie-fum gene flow outliers.
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Title ld_bfoutliers_fparents_in
Downloaded 1 time
Description LD analysis fum parents genotypes for bie-fum gene flow outliers.
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Title ld_bfoutliers_oparents_in
Downloaded 1 time
Description LD analysis occ parents genotypes for bie-fum gene flow outliers.
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Title ld_booutliers_bfadvhybrids_in
Downloaded 1 time
Description LD analysis bie-fum advanced hybrids genotypes for bie-occ gene flow outliers.
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Title ld_booutliers_boadvhybrids_in
Downloaded 1 time
Description LD analysis bie-occ advanced hybrids genotypes for bie-occ gene flow outliers.
Download ld_booutliers_boadvhybrids_in.txt (6.538 Kb)
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Title ld_booutliers_bparents_in
Downloaded 1 time
Description LD analysis bie parents genotypes for bie-occ gene flow outliers.
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Title ld_booutliers_fparents_in
Downloaded 1 time
Description LD analysis fum parents genotypes for bie-occ gene flow outliers.
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Title ld_booutliers_oparents_in
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Description LD analysis occ parents genotypes for bie-occ gene flow outliers.
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Title advancedhybrid_samplelist_bo
Downloaded 1 time
Description LD analysis list of bie-occ advanced hybrid samples.
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Title advancedhybrid_samplelist_bf
Downloaded 1 time
Description LD analysis list of bie-fum advanced hybrid samples.
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Title README
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Description Analysis notes for Blackburn et al 2017.
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When using this data, please cite the original publication:

Blackburn GS, Brunet BMT, Muirhead K, Cusson M, Béliveau C, Levesque RC, Lumley LM, Sperling FAH (2017) Distinct sources of gene flow produce contrasting population genetic dynamics at different range boundaries of a Choristoneura budworm. Molecular Ecology 26(23): 6666-6684. https://doi.org/10.1111/mec.14386

Additionally, please cite the Dryad data package:

Blackburn GS, Brunet BMT, Muirhead K, Cusson M, Béliveau C, Levesque RC, Lumley LM, Sperling FAH (2017) Data from: Distinct sources of gene flow produce contrasting population genetic dynamics at different range boundaries of a Choristoneura budworm. Dryad Digital Repository. https://doi.org/10.5061/dryad.9c50s
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