Data from: Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole

Barbosa S, Paupério J, Herman JS, Ferreira CM, Pita R, Vale-Gonçalves HM, Cabral JA, Garrido-García JA, Soriguer RC, Beja P, Mira A, Alves PC, Searle JB

Date Published: December 27, 2016

DOI: http://dx.doi.org/10.5061/dryad.9fc86

 

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Title BRCA1_MC_T
Downloaded 6 times
Description Alignment of 76 sequences from Cabrera vole tissue samples of the autossomal BRCA1 gene, exon 11.
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Title COPS7_MC_T
Downloaded 3 times
Description Alignment of 77 sequences from Cabrera vole tissue samples of the autossomal COPS7A gene, intron 4.
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Title CYTB_MC_TNI
Downloaded 9 times
Description Alignment of 284 sequences of Cabrera vole tissue samples and bones (from owl pellets) for the mitochondrial cyt-b gene.
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Title DBX5_MC_T
Downloaded 3 times
Description Alignment of 79 sequences of Cabrera vole tissue samples for the sex-linked (X-chromossome) DBX gene, intron 5.
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Title DBX7_MC_T
Downloaded 6 times
Description Alignment of 79 sequences of Cabrera vole tissue samples for the sex-linked (X-chromossome) DBX gene intron 7. There are two individuals with heterozygous indels, thus for those we provide phased sequences which are identified as "code" and "code+ii".
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Title IRBP_MC_T
Downloaded 3 times
Description Alignment of 78 sequences of Cabrera vole tissue samples for the autossomal gene IRBP, exon 1.
Download IRBP_MC_T.fas (77.12 Kb)
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Title OSTA5_MC_T
Downloaded 5 times
Description Alignment of 74 sequences of Cabrera vole tissue samples for the autossomal gene OSTA, intron 5.
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Title PNPO3_MC_T
Downloaded 4 times
Description Alignment of 77 sequences of Cabrera vole tissue samples for the autossomal gene PNPO, intron 3.
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Title RAG1_MC_T
Downloaded 4 times
Description Alignment of 70 sequences of Cabrera vole tissue samples for the autossomal gene RAG1, exon 1.
Download RAG1_MC_T.fas (91.05 Kb)
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Title SLC38_MC_T
Downloaded 3 times
Description Alignment of 74 sequences of Cabrera vole tissue samples for the autossomal gene SLC38A7, intron 8.
Download SLC38_MC_T.fas (47.28 Kb)
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Title SMCY7_MC_T
Downloaded 4 times
Description Alignment of 39 sequences of Cabrera vole tissue samples for the sex-linked (Y-chromossome) gene SMCY, intron 7.
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When using this data, please cite the original publication:

Barbosa S, Paupério J, Herman JS, Ferreira CM, Pita R, Vale-Gonçalves HM, Cabral JA, Garrido-García JA, Soriguer RC, Beja P, Mira A, Alves PC, Searle JB (2017) Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole. Molecular Ecology 26(3): 951–967. http://dx.doi.org/10.1111/mec.13994

Additionally, please cite the Dryad data package:

Barbosa S, Paupério J, Herman JS, Ferreira CM, Pita R, Vale-Gonçalves HM, Cabral JA, Garrido-García JA, Soriguer RC, Beja P, Mira A, Alves PC, Searle JB (2016) Data from: Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.9fc86
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