Data from: Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana

Manthey J, Klicka J, Spellman G

Date Published: February 24, 2015

DOI: http://dx.doi.org/10.5061/dryad.9h569

 

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Title Consensus sequences
Downloaded 5 times
Description Consensus sequences of all loci used in analyses. Loci identifier numbers match those of other uploaded files.
Download Certhia30_variable_loci.fasta (834.2 Kb)
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Title SNPs
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Description SNPs of each individual, with the top row containing the identifier locus for each SNP. Individual names match those in the publication. Missing data coded as 0.
Download certhia30.structure.tsv (2.730 Mb)
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Title Summary Statistics
Downloaded 4 times
Description Output of STACKS for the 30% coverage dataset. Populations identified as north or south (lines 1 & 2). Locus ID matches identifiers of other uploaded files. BP indicates location of each SNP (starting at bp 0), allowing placement of SNPs into consensus sequences.
Download certhia30.sumstats.tsv (3.276 Mb)
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When using this data, please cite the original publication:

Manthey J, Klicka J, Spellman G (2015) Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana. Heredity 115: 165-172. http://dx.doi.org/10.1038/hdy.2015.27

Additionally, please cite the Dryad data package:

Manthey J, Klicka J, Spellman G (2015) Data from: Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.9h569
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