Data from: Genomic islands of divergence are not affected by geography of speciation in sunflowers.

Renaut S, Grassa CJ, Yeaman S, Lai Z, Kane NK, Moyers BT, Bowers JE, Burke JM, Rieseberg LH

Date Published: May 8, 2013

DOI: http://dx.doi.org/10.5061/dryad.9q1n4

 

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Title HA412_trinity_noAltSplice_400bpmin
Downloaded 64 times
Description fasta file. Reference transcriptome described in the study and used for all alignments.
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Title ordered_transcriptome_trinity.txt
Downloaded 50 times
Description This is the genetic map used to position genes and SNPs. Column 1 refers to the contig name, column 2 to the chromosome number and column 3 to the position in centimorgans
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Title ann_pet_fst_map
Downloaded 27 times
Description SNP table for H. annuus - H. petiolaris comparison. This table also contain Fst ("Fst" column) values for each SNP and the position ("map_centiMorgan") and chromosome number ("LG") were SNPs are found.
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Title deb_arg_fst_map
Downloaded 21 times
Description SNP table for H.debilis - H. argophyllus comparison. This table also contain Fst ("Fst" column) values for each SNP and the position ("map_centiMorgan") and chromosome number ("LG") were SNPs are found.
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Title pet_arg_fst_map
Downloaded 29 times
Description SNP table for H. petiolaris -H. argophyllus comparison. This table also contain Fst ("Fst" column) values for each SNP and the position ("map_centiMorgan") and chromosome number ("LG") were SNPs are found.
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Title ann_deb_fst_map
Downloaded 15 times
Description SNP table for H. annuus - H. debilis comparison. This table also contain Fst ("Fst" column) values for each SNP and the position ("map_centiMorgan") and chromosome number ("LG") were SNPs are found.
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Title coverage_per_gene_individuals
Downloaded 56 times
Description Column 1 is the name of the reference contig. Column 2, the length of the reference. Column 3 and after, the number of sequences aligedn to that particular contig (calculated using samtools idxstats).
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When using this data, please cite the original publication:

Renaut S, Grassa CJ, Yeaman S, Moyers BT, Lai Z, Kane NC, Bowers JE, Burke JM, Rieseberg LH (2013) Genomic islands of divergence are not affected by geography of speciation in sunflowers. Nature Communications 4: 1827. http://dx.doi.org/10.1038/ncomms2833

Additionally, please cite the Dryad data package:

Renaut S, Grassa CJ, Yeaman S, Lai Z, Kane NK, Moyers BT, Bowers JE, Burke JM, Rieseberg LH (2013) Data from: Genomic islands of divergence are not affected by geography of speciation in sunflowers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.9q1n4
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