Data from: Model misspecification confounds the estimation of rates and exaggerates their time dependency

Emerson B, Alvarado-Serrano D, Hickerson M

Date Published: November 6, 2015

DOI: http://dx.doi.org/10.5061/dryad.9r295

 

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Title Mutation rates simulation pipeline
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Description The simulation pipeline generates coalescent-based genealogies that comprise a mixed of current and ancestral samples. These genealogies are then converted into phylograms with branch lengths in units of substitutions per site onto which mutations are simulated. The resultant sequences serve then to estimate substitution rates in BEAST using the simulated date-calibrated data.
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Title Compressed files simulation pipeline
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Description Compressed files for the simulation pipeline generates coalescent-based genealogies that comprise a mixed of current and ancestral samples. These genealogies are then converted into phylograms with branch lengths in units of substitutions per site onto which mutations are simulated. The resultant sequences serve then to estimate substitution rates in BEAST using the simulated date-calibrated data.
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When using this data, please cite the original publication:

Emerson B, Alvarado-Serrano D, Hickerson M (2015) Model misspecification confounds the estimation of rates and exaggerates their time dependency. Molecular Ecology, 24(24): 6013–6020. http://dx.doi.org/ 10.1111/mec.13451

Additionally, please cite the Dryad data package:

Emerson B, Alvarado-Serrano D, Hickerson M (2015) Data from: Model misspecification confounds the estimation of rates and exaggerates their time dependency. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.9r295
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