Data from: Ancient recombination events between human herpes simplex viruses

Burrel S, Boutolleau D, Ryu D, Agut H, Merkel K, Leendertz FH, Calvignac-Spencer S

Date Published: April 5, 2017

DOI: http://dx.doi.org/10.5061/dryad.9t21c

 

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Title Annotated HSV-2v genomes
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Description Putative coding sequences were annotated with Geneious 10.0.5 using a conservative similarity threshold of 60% to coding sequences annotated in the HSV-2 reference genome (NC_001798). GFF3 format.
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Title Mutliple sequence alignments including HSV-2v sequences
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Description This archive contains the following alignments: Whole genome 1, 2 and 3; Whole genome de novo 2 and 3; Non recombinant 1 to 10; UL15 non recombinant and recombinant, UL29 non recombinant and recombinant, UL30 non recombinant and recombinant, UL39 non recombinant and recombinant. Whole genome 2 and 3 and Whole genome de novo 2 and 3 are provided as NEXUS files and include site masks pinpointing the recombinant regions (Whole genome 2 and Whole genome de novo 2 and 3) and large non recombinant fragments (Whole genome 3). All other alignments are provided as FASTA files.
Download alignments.zip (13.76 Mb)
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When using this data, please cite the original publication:

Burrel S, Boutolleau D, Ryu D, Agut H, Merkel K, Leendertz FH, Calvignac-Spencer S (2017) Ancient recombination events between human herpes simplex viruses. Molecular Biology and Evolution 34(7): 1713-1721. http://dx.doi.org/10.1093/molbev/msx113

Additionally, please cite the Dryad data package:

Burrel S, Boutolleau D, Ryu D, Agut H, Merkel K, Leendertz FH, Calvignac-Spencer S (2017) Data from: Ancient recombination events between human herpes simplex viruses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.9t21c
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