Data from: Seed transmission of soybean vein necrosis virus: the first Tospovirus implicated in seed transmission

Groves C, German T, Dasgupta R, Mueller D, Smith DL

Date Published: January 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.b1pg3

 

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Title Seed Quality Raw data and Analysis code
Downloaded 12 times
Description Seed quality raw data with SAS statistical analysis code
Download Seed Quality Raw data and Analysis code.rtf (2.903 Kb)
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Title Sequence Raw Data
Downloaded 16 times
Description Raw Sequences for PCR products resulting from PCR reactions using primers in Table 1 of the manuscript
Download Sequences_PlosOne.docx (15.62 Kb)
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Title Sequences of nested PCR products-SVNV-06302015
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Description Sequences of typical Nested PCR Products
Download Sequences of nested PCR products-SVNV-0630....docx (17.11 Kb)
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Title Alignment-BAST-SVNV
Downloaded 15 times
Description Alignment of Typical sequences from nested PCR against known SVNV sequences
Download Alignment-BAST-SVNV.docx (14.66 Kb)
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Title 150701J2_07E_2-27-2M-1
Downloaded 25 times
Description Raw Sequencing Trace File of a SVNV-positive seed sample.
Download 150701J2_07E_2-27-2M-1.pdf (1.132 Mb)
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Title R10_Root_SVNV-seq
Downloaded 10 times
Description Raw sequence from soybean root extraction
Download R10_Root_SVNV-seq.docx (13.41 Kb)
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Title Raw Gene Counts for RNAseq Analysis
Downloaded 15 times
Description Unique Gene Read counts for SVNV genes for bulk and field samples.
Download Raw Gene Count Data_RNAseq.xlsx (21.10 Kb)
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Title Bulk Sample Mapped Counts for RNA seq
Downloaded 23 times
Description Total Mapped Counts for the RNA seq analysis of the bulked sample.
Download Bulk_MappedCounts.pdf (4.414 Kb)
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Title Bulk Sample Mapped Counts Unique RNA seq
Downloaded 19 times
Description Unique Mapped Counts for the RNA seq analysis of the bulked sample.
Download Bulk_MappedCounts_Unique.pdf (4.433 Kb)
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Title Field sample Mapped counts RNA seq
Downloaded 18 times
Description Total Mapped Counts for the RNA seq analysis of the symptomatic field sample.
Download Field_Fig2A_MappedCounts.pdf (4.386 Kb)
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Title Field Sample Mapped Counts Unique RNA seq
Downloaded 27 times
Description Unique Mapped Counts for the RNA seq analysis of the symptomatic field sample.
Download Field_Fig2B_MappedCounts_Unique.pdf (4.486 Kb)
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When using this data, please cite the original publication:

Groves C, German T, Dasgupta R, Mueller D, Smith DL (2016) Seed transmission of soybean vein necrosis virus: the first Tospovirus implicated in seed transmission. PLOS ONE 11(1): e0147342. http://dx.doi.org/10.1371/journal.pone.0147342

Additionally, please cite the Dryad data package:

Groves C, German T, Dasgupta R, Mueller D, Smith DL (2016) Data from: Seed transmission of soybean vein necrosis virus: the first Tospovirus implicated in seed transmission. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.b1pg3
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