Data from: Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (Hymenoptera: Formicidae)

Prebus M

Date Published: November 28, 2017

DOI: https://doi.org/10.5061/dryad.b464m

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Title Complete set of aligned UCE loci
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Description This file contains the complete set of 2510 aligned, untrimmed ultraconserved element loci in FASTA format
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Title 10-gene Sanger sequencing dataset
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Description This file contains a broad selection of data files for analyses of the 10 gene Sanger sequencing dataset, including constrained and unconstrained analyses, BEAST xml files, and input for BUCKy, MrBayes, IQ-TREE, and RAxML.
Download 10-gene-dataset.tar.gz (10.12 Mb)
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Title UCE ASTRAL analysis input files
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Description This file contains the binned, weighted input files for the ASTRAL species tree analysis of the ultraconserved element dataset.
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Title UCE analysis input files
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Description This file contains the 'min90' and 'coding' ultraconserved elements alignments and their associated partition files.
Download UCE-datasets.tar.gz (29.34 Mb)
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Title BioGeoBEARS
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Description This file contains the input files for the BioGeoBEARS analysis of the empirical data, as well as a script for model-averaging BioGeoBEARS output.
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Title HiSSE scripts
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Description This file contains the scripts and input files for the HiSSE analysis of arboreality and parasitism in Temnothorax.
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Title Data matrices and tree files for the 'min90' UCE and 10-gene Sanger datasets
Description This links to matrices and trees associated with Figures 2 and 3 in the main article.
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Title Raw sequence reads (SRA PRJNA393044)
Description Raw illumina reads in FASTQ format for all samples sequenced in this study. Samples were enriched for ultra-conserved element loci.
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When using this data, please cite the original publication:

Prebus M (2017) Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (hymenoptera: Formicidae). BMC Evolutionary Biology 17: 250. https://doi.org/10.1186/s12862-017-1095-8

Additionally, please cite the Dryad data package:

Prebus M (2017) Data from: Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (Hymenoptera: Formicidae). Dryad Digital Repository. https://doi.org/10.5061/dryad.b464m
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