Data from: Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids

Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D

Date Published: November 3, 2016

DOI: http://dx.doi.org/10.5061/dryad.b649s

 

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Title Table S1. Germplasm information.
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Description The parental genotypes of each hybrid are listed along with whether the line was included in the final data set (yes=1, no=0). Lines were not included if their manually-fertilized parent did not germinate.
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Title Table S2. GCA, SCA, and heritability estimates.
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Description Values for plots in Fig 1.
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Title Table S3. Summary of significant SNPs detected in GWA analyses.
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Description Number of significant SNPs detected for each trait for both within-study and across-study Bonferroni correction.
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Title Table S4. Summary of significant SNPs per trait.
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Description IDs (chr_position) of all significant SNPs and their significance status in each GWA study.
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Title Table S5. Summary of SConES SNPs.
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Description Number of associated SNPs detected for each trait.
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Title Table S6. Summary of associated SConES SNPs per trait.
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Description IDs (chr_position) of all associated SNPs and their significance status in each GWA study.
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Title Table S7. Summary of candidate genes.
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Description IDs and location of all significant regions, their associated traits, genetic behavior, and candidate causal genes.
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Title Table S8. Gene Ontology (GO) enrichment.
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Description GO terms significantly associated with the top 1,000 associated SNPs of each trait are listed. Significance was established using a 5% FDR threshold within each trait.
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Title Table S9. Genomic control (GC) values.
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Description Genomic control values for all GWA analyses. Q-Q plots for GWAs with significant SNPs are shown in SI Appendix, Fig S20.
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When using this data, please cite the original publication:

Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D (2016) Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America 113(46): E7317–E7326. http://dx.doi.org/10.1073/pnas.1615268113

Additionally, please cite the Dryad data package:

Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D (2016) Data from: Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.b649s
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