Data from: Resolving evolutionary relationships in closely related species with whole-genome sequencing data

Nater A, Burri R, Kawakami T, Smeds L, Ellegren H

Date Published: June 29, 2015

DOI: http://dx.doi.org/10.5061/dryad.b6gj8

 

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Title Supporting Information_Tables S2-S4_Figures S1-S5
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Description Contains Supporting Tables S2-S4 and Supporting Figures S1-S5
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Title Supporting Table S1
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Description Supporting Table S1: List of all flycatcher samples used in the study.
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Title Supporting Figure S6
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Description Supporting Figure S6: Distribution of nucleotide diversity (π, panel A), genealogical sorting index (gsi, panel B), depth of the lowest common ancestor of all four flycatcher species relative to the root depth (panel C), frequencies of all 15 possible rooted tree topologies (panel D), and topology diversity index (tdi, panel E) for all chromosomes.
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Title Supporting Figure S7
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Description Supporting Figure S7: Frequencies of the three possible unrooted tree topologies (panel A) and the six possible internal species pairings (panel B) for all chromosomes.
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Title Data Files
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Description Contains input files for different species tree analyses and phylogenetic trees.
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Title Scripts
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Description Contains all the scripts used for data analysis in the paper.
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When using this data, please cite the original publication:

Nater A, Burri R, Kawakami T, Smeds L, Ellegren H (2015) Resolving evolutionary relationships in closely related species with whole-genome sequencing data. Systematic Biology 64(6): 1000-1017. http://dx.doi.org/10.1093/sysbio/syv045

Additionally, please cite the Dryad data package:

Nater A, Burri R, Kawakami T, Smeds L, Ellegren H (2015) Data from: Resolving evolutionary relationships in closely related species with whole-genome sequencing data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.b6gj8
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