Data from: Genetic structure in the European endemic seabird, Phalacrocorax aristotelis, was shaped by a complex interaction of historical and contemporary, physical and non-physical drivers

Thanou E, Sponza S, Nelson EJ, Perry A, Wanless S, Daunt F, Cavers S

Date Published: December 27, 2016

DOI: http://dx.doi.org/10.5061/dryad.b85pj

 

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Title MtDNA concatenated dataset with outgroup
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Description Fasta file generated with CLUSTALX v.2 of 79 concatenated mtDNA (CR1 and ND2) shag sequences and 2 outgroup sequences, used in phylogenetic analyses.
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Title Molecular clock analysis of the shag
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Description Input file generated with BEAST v.1.8 used for the molecular clock analysis, under a relaxed clock of uncorrelated lognormal distribution model and a “Coalescent: Constant Size” prior on rates of cladogenesis.
Download coalrelaxmolclock.xml (131.8 Kb)
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Title Population structure analysis using microsatellite data
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Description Input files (including microsatellite raw data, estimation parameters and population labels) used in the STRUCTURE v.2.3.4 program to estimate the genetic structure of 28 shag populations.
Download microsat structure.rar (6.815 Kb)
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When using this data, please cite the original publication:

Thanou E, Sponza S, Nelson EJ, Perry A, Wanless S, Daunt F, Cavers S (2017) Genetic structure in the European endemic seabird, Phalacrocorax aristotelis, shaped by a complex interaction of historical and contemporary, physical and nonphysical drivers. Molecular Ecology 26(10): 2796–2811. http://dx.doi.org/10.1111/mec.13996

Additionally, please cite the Dryad data package:

Thanou E, Sponza S, Nelson EJ, Perry A, Wanless S, Daunt F, Cavers S (2016) Data from: Genetic structure in the European endemic seabird, Phalacrocorax aristotelis, was shaped by a complex interaction of historical and contemporary, physical and non-physical drivers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.b85pj
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