Data from: The hindgut-lumen prokaryotic microbiota of the lignocellulose-degrading termite Reticulitermes flavipes and its responses to dietary lignocellulose composition

 

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Title TableS3-phylum
Downloaded 833 times
Description Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to phylum from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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Title Table S4. Annotation of total 16S reads to class level.
Downloaded 222 times
Description Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to class level from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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Title TableS5-order
Downloaded 150 times
Description Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to order level from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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Title TableS6-family
Downloaded 130 times
Description Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to family level from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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Title TableS7-genus
Downloaded 543 times
Description Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to genus level from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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Title TableS8-species
Downloaded 169 times
Description Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to species level from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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Title TableS9-OTUs
Downloaded 207 times
Description A listing and annotation of the OTUs determined by ESPRITt analysis of the 454 16S data set. The file provides the abundance of the different reads detected within identified species-level OTUs.
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Title termite16S_Clean fas
Downloaded 72 times
Description After pre-processing, 475,980 reads are left, of which 203,223 are non-redundant, these reads are included in the termite16S_Clean.fas file
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Title termite16S_Clean frq
Downloaded 64 times
Description Represents the occurrence of each read this in combination with the data in termite16SClean.fas serves as inputs for ESPRIT.
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Title termite16S_distribution
Downloaded 182 times
Description The termite16S_distribution.csv is a spreadsheet showing the occurrence of each read in each sample, so that one can easily find out what sequence belongs to what sample. The order of the read names is exactly the same as the sequence file. The output of ESPRIT provides a list of read indices belong to the same OTU (be aware that the indices are zero-based). By summing up the corresponding rows in termite16S_distribution.csv, one will easily get the breakdown of the OTU among samples. The S7 to S18 represent 16S data collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
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When using this data, please cite the original publication:

Boucias DG, Cai Y, Sun Y, Lietze V, Sen R, Raychoudhury R, Scharf ME (2013) Data from: The hindgut-lumen prokaryotic microbiota of the lignocellulose-degrading termite Reticulitermes flavipes and its responses to dietary lignocellulose composition. Molecular Ecology 22(7): 1836–1853. http://dx.doi.org/10.1111/mec.12230

Additionally, please cite the Dryad data package:

Boucias DG, Cai Y, Sun Y, Lietze V, Sen R, Raychoudhury R, Scharf ME (2013) Data from: The hindgut-lumen prokaryotic microbiota of the lignocellulose-degrading termite Reticulitermes flavipes and its responses to dietary lignocellulose composition. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.b922k
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