Data from: Introgression and selection shaped the evolutionary history of sympatric sister-species of coral reef fishes (genus: Haemulon)

Bernal MA, Gaither MR, Simison WB, Rocha LA

Date Published: November 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.b9482

 

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Title Sanger sequences
Downloaded 11 times
Description Alignments for the Sanger sequences of mitochondrial markers COI, CytB and CR, and nuclear markers TMO and RAG2. The names of the individuals include the respective collection sites. The abbreviation Hmacu corresponds to Haemulon maculicauda, and Hflav to Haemulon flaviguttatum.
Download Grunts-sanger-sequences.zip (8.025 Kb)
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Title Genotype data in STRUCTURE format
Downloaded 11 times
Description The analyses corresponding to the SNP dataset (obtained via RADSeq) are based on this genotype dataset in STRUCTURE format. The first column represents the sample name, second column corresponds to the "population" of origin (2 species and 2 locations), and the rest of the columns represent the genotypes for the specific loci. The names of the individuals contain the location site and the abbreviation Hmac corresponds to Haemulon maculicauda, and Hflav corresponds to Haemulon flaviguttatum.
Download Grunts-structure.txt (568.2 Kb)
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Title Input file for Migrate-n
Downloaded 6 times
Description This text file contains the sequences that were used for the analysis of migration presented in the manuscript, which were performed with Migrate-n. Sequences of both species were separated, but there was no distinction made by collection site.
Download HMA-HFL-migrateCOICytB-2016.txt (39.76 Kb)
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Title Raw reads
Downloaded 5 times
Download Grunts-RADSeq.zip (6.486 Gb)
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When using this data, please cite the original publication:

Bernal MA, Gaither MR, Simison WB, Rocha LA (2017) Introgression and selection shaped the evolutionary history of sympatric sister-species of coral reef fishes (genus: Haemulon ). Molecular Ecology 26(2): 639-652. http://dx.doi.org/10.1111/mec.13937

Additionally, please cite the Dryad data package:

Bernal MA, Gaither MR, Simison WB, Rocha LA (2016) Data from: Introgression and selection shaped the evolutionary history of sympatric sister-species of coral reef fishes (genus: Haemulon). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.b9482
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