Data from: Silenced rRNA genes are activated and substitute for partially eliminated active homoelogs in the recently formed allotetraploid, Tragopogon mirus (Asteraceae)

Kovařík A, Dobešová E, Matyášek R, Leitch AR, Soltis PS, Soltis DE, Malinska H

Date Published: November 6, 2014

DOI: http://dx.doi.org/10.5061/dryad.bb249

 

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Title TableS3
Description Mutation analysis of rDNA and its transcripts in 33A and 33B individuals. The NGS reads are clustered based on similarity. () - reads with 100% identity to the reference, (G->A) marks substitution, (231-232:-->G) marks insertion, (61:G->-) marks deletion. The order of data sets in Microsoft Excel sheets is as follows: • Sheet “33A_gDNA-duRef”: Mutation analysis of genomic rDNA of 33A plant. Reads mapped to the T. dubius ITS1 reference. • Sheet “33B_gDNA-duRef”: Mutation analysis of genomic rDNA of 33B plant. Reads mapped to the T. dubius ITS1 reference. • Sheet “33A_RNA_leaf”: Mutation analysis of rRNA pools in 33A leaf. Reads mapped to the T. dubius ITS1 reference. • Sheet “33A_RNA_root”: Mutation analysis of rRNA pools in 33A root. Reads mapped to the T. dubius ITS1 reference. • Sheet “33B_RNA_leaf”: Mutation analysis of rRNA pools in 33B leaf. Reads mapped to the T. dubius ITS1 reference. • Sheet “33B_RNA_root”: Mutation analysis of rRNA pools in 33B root. Reads mapped to the T. dubius ITS1 reference. • Sheet “33A_gDNA-poRef”: Mutation analysis of genomic rDNA of 33A plant. Reads mapped to the T. porrifolius ITS1 reference. • Sheet “33B_gDNA-poRef”: Mutation analysis of genomic rDNA of 33B plant. Reads mapped to the T. porrifolius ITS1 reference. • Sheet “statistics”: A chi square test for differential distribution of P1 and P2 variants in parental T. porrifolius and T. mirus allotetraploid.
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When using this data, please cite the original publication:

Dobešová E, Malinska H, Matyášek R, Leitch AR, Soltis DE, Soltis PS, Kovařík A (2015) Silenced rRNA genes are activated and substitute for partially eliminated active homoelogs in the recently formed allotetraploid, Tragopogon mirus (Asteraceae). Heredity 114(3): 356-365. http://dx.doi.org/10.1038/hdy.2014.111

Additionally, please cite the Dryad data package:

Kovařík A, Dobešová E, Matyášek R, Leitch AR, Soltis PS, Soltis DE, Malinska H (2014) Data from: Silenced rRNA genes are activated and substitute for partially eliminated active homoelogs in the recently formed allotetraploid, Tragopogon mirus (Asteraceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.bb249
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