Data from: Genome-wide patterns of regulatory divergence revealed by introgression lines

Guerrero RF, Posto AL, Moyle LC, Hahn MW

Date Published: February 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.bg41s

 

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Title R source, markdown and helper file
Downloaded 19 times
Description The zip file contains all the source code used in our study (Guerrero_etal_source.R), as well as the R markdown file (Guerrero_etal_SuppInfo.Rmd) used to produce the Supporting Information (the .pdf output is also included). Two more files necessary for running the scripts (isNIL_bool_*) are included. These have the information on the state of each gene in the S. lycopersicum genome with respect to the introgressed regions in each introgression line. An allele can be introgressed (coded "true") or background (coded "false")
Download Guerrero_etal_scripts.zip (1.080 Mb)
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Title Anther (pollen) gene expression data
Description Gene expression in pollen (microarray data) for 4 S. lycopersicum x S. pennellii introgression lines, and for S. lycopersicum. Protocols described in the GEO entry.
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Title Carpel (seed) gene expression data
Description Gene expression in seed (from microarrays) for 3 S. lycopersicum x S. pennellii introgression lines, and for S. lycopersicum. Protocols described in the GEO entry.
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Title Gene expression in vegetative tissue
Downloaded 15 times
Description Processed data generated from RNA-Seq data from apices of 74 S. lycopersicum x S. pennellii introgression lines, and the two parents, from Chitwood et al. (2013; The Plant Cell, 25). Please see Readme.txt for further details on how to obtain the raw data.
Download Leaf_sun_expression.txt (39.51 Mb)
Download Readme.txt (697 bytes)
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When using this data, please cite the original publication:

Guerrero RF, Posto AL, Moyle LC, Hahn MW (2016) Genome-wide patterns of regulatory divergence revealed by introgression lines. Evolution 70(3): 696–706. http://dx.doi.org/10.1111/evo.12875

Additionally, please cite the Dryad data package:

Guerrero RF, Posto AL, Moyle LC, Hahn MW (2016) Data from: Genome-wide patterns of regulatory divergence revealed by introgression lines. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.bg41s
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