Data from: The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach

Melo-Ferreira J, Lemos de Matos A, Areal H, Lissovsky AA, Carneiro M, Esteves PJ

Date Published: January 29, 2015

DOI: http://dx.doi.org/10.5061/dryad.bn547

 

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Title 01ALB_phased_full
Downloaded 6 times
Description Phased sequence alignment of ALB sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 01ALB_phased_full.fas (31.08 Kb)
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Title 02AMOT_phased_full
Downloaded 2 times
Description Phased sequence alignment of AMOT sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 02AMOT_phased_full.fas (9.439 Kb)
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Title 03DARC_phased_full
Downloaded 5 times
Description Phased sequence alignment of DARC sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 03DARC_phased_full.fas (45.08 Kb)
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Title 04GRIA3_phased_full
Downloaded 1 time
Description Phased sequence alignment of GRIA3 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 04GRIA3_phased_full.fas (30.54 Kb)
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Title 05IL1RAPL1_phased_full
Downloaded 3 times
Description Phased sequence alignment of IL1RAPL1 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 05IL1RAPL1_phased_full.fas (28.97 Kb)
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Title 06OXA1L_phased_full
Downloaded 3 times
Description Phased sequence alignment of OXA1L sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 06OXA1L_phased_full.fas (34.35 Kb)
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Title 07PPOX_phased_full
Downloaded 3 times
Description Phased sequence alignment of PPOX sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 07PPOX_phased_full.fas (36.77 Kb)
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Title 08PRKCI_phased_full
Downloaded 1 time
Description Phased sequence alignment of PRKCI sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 08PRKCI_phased_full.fas (19.06 Kb)
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Title 09SPTBN1_phased_full
Downloaded 2 times
Description Phased sequence alignment of SPTBN1 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 09SPTBN1_phased_full.fas (37.69 Kb)
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Title 10TSHB_phased_full
Downloaded 1 time
Description Phased sequence alignment of TSHB sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 10TSHB_phased_full.fas (23.89 Kb)
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Title 11UCP2_phased_full
Downloaded 3 times
Description Phased sequence alignment of UCP2 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 11UCP2_phased_full.fas (19.00 Kb)
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Title 12UCP4_phased_full
Downloaded 2 times
Description Phased sequence alignment of UCP4 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01).
Download 12UCP4_phased_full.fas (27.61 Kb)
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Title 01ALB_phased_recomb_free
Downloaded 1 time
Description Phased sequence alignment of the largest non-recombining blocks of ALB sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 01ALB_phased_recomb_free.fas (8.389 Kb)
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Title 02AMOT_phased_recomb_free
Downloaded 1 time
Description Phased sequence alignment of the largest non-recombining blocks of AMOT sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 02AMOT_phased_recomb_free.fas (8.236 Kb)
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Title 03DARC_phased_recomb_free
Downloaded 1 time
Description Phased sequence alignment of the largest non-recombining blocks of DARC sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 03DARC_phased_recomb_free.fas (13.84 Kb)
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Title 04GRIA3_phased_recomb_free
Downloaded 1 time
Description Phased sequence alignment of the largest non-recombining blocks of GRIA3 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 04GRIA3_phased_recomb_free.fas (10.25 Kb)
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Title 06OXA1L_phased_recomb_free
Downloaded 1 time
Description Phased sequence alignment of the largest non-recombining blocks of OXA1L sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 06OXA1L_phased_recomb_free.fas (6.361 Kb)
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Title 07PPOX_phased_recomb_free
Downloaded 1 time
Description Phased sequence alignment of the largest non-recombining blocks of PPOX sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 07PPOX_phased_recomb_free.fas (36.77 Kb)
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Title 08PRKCI_phased_recomb_free
Description Phased sequence alignment of the largest non-recombining blocks of PRKCI sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 08PRKCI_phased_recomb_free.fas (7.48 Kb)
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Title 09SPTBN1_phased_recomb_free
Downloaded 3 times
Description Phased sequence alignment of the largest non-recombining blocks of SPTBN1 sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 09SPTBN1_phased_recomb_free.fas (20.62 Kb)
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Title 10TSHB_phased_recomb_free
Downloaded 6 times
Description Phased sequence alignment of the largest non-recombining blocks of TSHB sequences (phase reconstruction for the Ochotona sequences was performed using PHASE v2.1 as implemented in DnaSP v5.10.01; largest non-recombining blocks determined using IMgc).
Download 10TSHB_phased_recomb_free.fas (9.08 Kb)
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When using this data, please cite the original publication:

Melo-Ferreira J, Lemos de Matos A, Areal H, Lissovsky AA, Carneiro M, Esteves PJ (2015) The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach. Molecular Phylogenetics and Evolution 84: 240-244. http://dx.doi.org/10.1016/j.ympev.2015.01.004

Additionally, please cite the Dryad data package:

Melo-Ferreira J, Lemos de Matos A, Areal H, Lissovsky AA, Carneiro M, Esteves PJ (2015) Data from: The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.bn547
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