Data from: The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken

Johnsson M, Rubin C, Höglund A, Sahlqvist A, Jonsson KB, Kerje S, Ekwall O, Kämpe O, Andersson L, Jensen P, Wright D

Date Published: April 11, 2014

DOI: http://dx.doi.org/10.5061/dryad.bs275

 

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Title Comb microarray data (raw and RMA preprocessed)
Downloaded 27 times
Description Microarray data for the 39 individual comb base samples. This files contains the raw as well as RMA preprocessed gene expression values, and design files for the custom NimbleGen gene expression chip used.
Download README.txt (742 bytes)
Download comb_microarray_data.tar.gz (233.4 Mb)
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Title Comb eQTL data (R/qtl format)
Downloaded 10 times
Description Residual comb masses, preprocessed gene expression data and genotypes of the 39 individuals of the comb eQTL study in R/qtl csv input format.
Download comb_eQTL_data_Rqtl_format.csv (25.58 Mb)
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Title RJF x OS genotypes (QTL Express format)
Downloaded 14 times
Description Genotype data from the Red Jungefowl x Obese strain White Leghorn intercross in QTL Express format.
Download OS_genotypes_QTLexpress_format.txt (1.227 Mb)
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Title RJF x OS genetic map (QTL Express format)
Downloaded 12 times
Description Genetic map file for the Red Junglefowl x Obese strain White Leghorn intercross in QTL Express format.
Download OS_map_QTLexpress_format.txt (13.64 Kb)
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Title RJF x OS bone phenotypes (QTL express format)
Downloaded 10 times
Description Bone phenotypes (residual values after adjusting for body weight) from the Red Junglefowl x Obese strain White Leghorn intercross in QTL Express format.
Download OS_phenotypes_QTLexpress_format.txt (151.7 Kb)
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Title Bone eQTL data (R/qtl format)
Downloaded 24 times
Description Residual bone and fecundity phenotypes (adjusted for body weight), preprocessed gene expression data and genotypes of the 127 individuals of the bone eQTL study in R/qtl csv input format.
Download bone_eQTL_data_Rqtl_format.csv (126.9 Mb)
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Title Bone microarray data (raw and RMA preprocessed)
Downloaded 15 times
Description Microarray data for the 127 individual bone samples. This files contains the raw as well as RMA preprocessed gene expression values, and design files for the custom NimbleGen gene expression chip used.
Download README.txt (571 bytes)
Download bone_microarray_data.tar.gz (824.9 Mb)
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When using this data, please cite the original publication:

Johnsson M, Rubin C, Höglund A, Sahlqvist A, Jonsson KB, Kerje S, Ekwall O, Kämpe O, Andersson L, Jensen P, Wright D (2014) The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken. Molecular Ecology 23(9): 2275–2286. http://dx.doi.org/10.1111/mec.12723

Additionally, please cite the Dryad data package:

Johnsson M, Rubin C, Höglund A, Sahlqvist A, Jonsson KB, Kerje S, Ekwall O, Kämpe O, Andersson L, Jensen P, Wright D (2014) Data from: The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.bs275
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