Data from: Use of a natural hybrid zone for genome-wide association mapping of craniofacial traits in the house mouse

Pallares LF, Harr B, Turner LM, Tautz D

Date Published: October 16, 2014

DOI: http://dx.doi.org/10.5061/dryad.bt848

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Phenotype_CraniofacialShape
Downloaded 1 time
Description The file contains the skull and mandible shape and size data. Centroid size (CS) and principal components (PC) were standardized to have mean=0 and standard deviation =1. Data was obtained after analyzing raw landmark coordinates in MorphoJ.
Download Phenotype_CraniofacialShape_standardized.txt (90.42 Kb)
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Title KinshipMatrix
Description Centered kinship matrix generated in GEMMA using all LD-pruned SNPs
Download sample.data_noVinonoNA1_FstALL_5MAF.txtHY...XX.txt (489.8 Kb)
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Title SNPdata.bed
Description Bed file generated in PLINK using the LD-pruned SNPs.
Download sample.data_noVinonoNA1_FstALL_5MAF.txtHY...ed.bed (7.341 Mb)
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Title SNPdata.bim
Description Bim file generated in PLINK using all LD-pruned SNPs
Download sample.data_noVinonoNA1_FstALL_5MAF.txtHY...ed.bim (5.477 Mb)
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Title SNPdata.fam
Description Fam file generated in PLINK using all the LD-pruned SNPs
Download sample.data_noVinonoNA1_FstALL_5MAF.txtHY...ed.fam (6.269 Kb)
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Title OriginalSNPdata.map
Description .map file with the original set of SNPs previous to LD-pruning
Download sample.data_noVinonoNA1_FstALL_5MAF.txtHY...lk.map (9.007 Mb)
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Title OriginalSNPdata.ped
Description .ped file with the original set of SNPs previous to LD-pruning
Download sample.data_noVinonoNA1_FstALL_5MAF.txtHY...lk.ped (211.3 Mb)
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When using this data, please cite the original publication:

Pallares LF, Harr B, Turner LM, Tautz D (2014) Use of a natural hybrid zone for genome-wide association mapping of craniofacial traits in the house mouse. Molecular Ecology 23(23): 5756-5770. http://dx.doi.org/10.1111/mec.12968

Additionally, please cite the Dryad data package:

Pallares LF, Harr B, Turner LM, Tautz D (2014) Data from: Use of a natural hybrid zone for genome-wide association mapping of craniofacial traits in the house mouse. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.bt848
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