Data from: Applying landscape genomic tools to forest management and restoration of Hawaiian koa (Acacia koa) in a changing environment

Gugger PF, Liang CT, Sork VL, Hodgskiss P, Wright JW

Date Published: August 11, 2017

DOI: https://doi.org/10.5061/dryad.c014p

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Title SNP calls for all samples in VCF format (before filtering)
Downloaded 4 times
Description SNP call data for all samples across all Hawaiian islands, produced by Stacks in VCF format, before final filtering steps.
Download KoaSNP_ALL.vcf (208.1 Mb)
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Title SNP calls for island of Hawaii in VCF format (before filtering)
Downloaded 2 times
Description SNP call data for samples from the island of Hawaii, produced by Stacks in VCF format, before final filtering steps.
Download KoaSNP_Hawaii.vcf (101.9 Mb)
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Title SNP calls for island of Hawaii, final in table format
Downloaded 3 times
Description SNP calls in tab-separated format with rows as individual samples and columns as loci as inferred from Stacks. These are the final data that were filtered such that the minor allele frequency is greater than 0.05 and there is no more than 30% missing data at a locus. This file contains both Acacia koa and A. koaia samples; the latter were removed prior to environmental association analyses.
Download KoaSNP_Hawaii_maf5mis30.tsv (5.405 Mb)
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Title SNP calls for all samples, final in table format
Downloaded 3 times
Description SNP calls in tab-separated format with rows as individual samples and columns as loci as inferred from Stacks. These are the final data that were filtered such that the minor allele frequency is greater than 0.05 and there is no more than 30% missing data at a locus. This file contains both Acacia koa and A. koaia samples.
Download KoaSNP_ALL_maf5mis30.tsv (7.769 Mb)
Details View File Details

When using this data, please cite the original publication:

Gugger PF, Liang CT, Sork VL, Hodgskiss P, Wright JW (2017) Applying landscape genomic tools to forest management and restoration of Hawaiian koa (Acacia koa ) in a changing environment. Evolutionary Applications, online in advance of print. https://doi.org/10.1111/eva.12534

Additionally, please cite the Dryad data package:

Gugger PF, Liang CT, Sork VL, Hodgskiss P, Wright JW (2017) Data from: Applying landscape genomic tools to forest management and restoration of Hawaiian koa (Acacia koa) in a changing environment. Dryad Digital Repository. https://doi.org/10.5061/dryad.c014p
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