Data from: Plant-mycorrhizal fungus co-occurrence network lacks substantial structure

Encinas-Viso F, Alonso D, Klironomos JN, Etienne RS, Chang ER

Date Published: October 16, 2015

DOI: http://dx.doi.org/10.5061/dryad.c0751

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title plant_spatial_presence_data
Downloaded 19 times
Description Spatial data of the plant species (presence(1)/absence(0)). The order of files (species names) follow the alphabetical order, as shown in Figure 1 of the manuscript.
Download plant_spatial_presence_data.zip (9.894 Kb)
Details View File Details
Title mycorrhiza_spatial_presence_data
Downloaded 14 times
Description AMF spatial data of the plant species (presence(1)/absence(0)). The order of files (species names) follow the alphabetical order, as shown in Figure 1 of the manuscript.
Download mycorrhiza_spatial_presence_data.zip (6.98 Kb)
Details View File Details
Title null_models_plant_amf_co_occurrence
Downloaded 12 times
Description R script that includes three null models (fixed species presences, environmentally constrained and equiprobable null model). The script uses the data files of plants and AMF spatial data submitted here. It will calculate the different co-occurrence metrics (C-score, fij), asymmetry and nestedness of the different null matrices.
Download null_models_plant_amf_co_occurrence.R (13.76 Kb)
Details View File Details
Title abiotic_spatial_data
Downloaded 7 times
Description Spatial data of abiotic factors: pH and organic matter (OM).
Download abiotic_spatial_data.dat (36.90 Kb)
Details View File Details
Title mutual_info_cluster
Downloaded 13 times
Description R script that calculates mutual information on the null matrices and the significant species co-occurrences. Input files necessary are the null matrices ("Pnullmatrices.RData" and "anullmatrices.RData") produced on the null model R script "null_models_plant_am_co_occurrence.R".
Download mutual_info_cluster.R (7.487 Kb)
Details View File Details

When using this data, please cite the original publication:

Encinas-Viso F, Alonso D, Klironomos JN, Etienne RS, Chang ER (2016) Plant-mycorrhizal fungus co-occurrence network lacks substantial structure. Oikos 125(4): 457–467. http://dx.doi.org/10.1111/oik.02667

Additionally, please cite the Dryad data package:

Encinas-Viso F, Alonso D, Klironomos JN, Etienne RS, Chang ER (2015) Data from: Plant-mycorrhizal fungus co-occurrence network lacks substantial structure. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c0751
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: