Data from: Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America

Sproul JS, Houston DD, Nelson CR, Evans RP, Crandall KA, Shiozawa DK

Date Published: December 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.c1sd4

 

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Title Matrix.for.RAxML.Analysis
Downloaded 15 times
Description A NEXUS file written for Mesquite with a concatenated alignment and for all haplotypes which was used to reconstruct phylogenetic relationships (in RAxML) of populations of Pteronarcella badia and its sister species across western North America.
Download Matrix.for.RAxML.Analysis.nex (97.38 Kb)
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Title BEAST.Divergence.Dating
Downloaded 7 times
Description The input file for BEAST containing all haplotypes which was used to infer divergence among populations of Pteronarcella badia across western North America.
Download BEAST.Divergence.Dating.xml (450.3 Kb)
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Title BEAST.BSP
Downloaded 12 times
Description A BEAST input file used to infer recent demographic history via Bayesian Skyline analysis of Pteronarcella badia populations in western North America.
Download BEAST.BSP.xml (414.9 Kb)
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Title Migrate.Infiles
Downloaded 13 times
Description Three input files used to infer migration rates of Pteronarcella badia across, and within several major drainage basin boundaries in Western North America.
Download Migrate.Infiles.zip (7.17 Kb)
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Title TCS.mtConcat
Downloaded 19 times
Description The input file used to generate a haplotype network of Pteronarcella badia in TCS using a concatenated dataset of mitochondrial genes.
Download TCS.mtConcat.nex (636.1 Kb)
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Title TCS.28S
Downloaded 5 times
Description The input file used to generate a haplotype network of Pteronarcella badia in TCS using a portion of 28S rRNA.
Download TCS.28S.nex (225.2 Kb)
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Title IBD.Infiles
Downloaded 17 times
Description Input files for IBD (Isolation-by-Distance) web server (http://ibdws.sdsu.edu/~ibdws/distances.html) used to test for isolation-by-distance as a determinant of population structure within each major clade of Pteronarcella badia sequences.
Download IBD.Infiles.zip (4.021 Kb)
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Title Sample Locality Data
Downloaded 16 times
Description A table that includes sample locality for all specimens in the study.
Download Table 2.docx (111.8 Kb)
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When using this data, please cite the original publication:

Sproul JS, Houston DD, Nelson CR, Evans RP, Crandall KA, Shiozawa DK (2015) Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America. BMC Evolutionary Biology 15: 279. http://dx.doi.org/10.1186/s12862-015-0553-4

Additionally, please cite the Dryad data package:

Sproul JS, Houston DD, Nelson CR, Evans RP, Crandall KA, Shiozawa DK (2015) Data from: Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c1sd4
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