Data from: Population genomic analysis of the blue crab Callinectes sapidus using genotyping-by-sequencing

Plough LV

Date Published: April 14, 2017

DOI: http://dx.doi.org/10.5061/dryad.c3318

 

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Title Filtered SNP genotype data set for Brazil, Massachussets and Florida
Downloaded 9 times
Description This is a genepop formatted file (.gen) with SNP data for the three populations examined in this study (Porto Allegre, Brazil, Panama city beach FL, and Agawam river MA, USA). File contains data for 2,783 SNPs which were filtered for HWE, LD, and coverage. Genotype data was exported from the Stacks pipeline v. 1.34 or higher.
Download ld_hwe_pruned_crab.gen (386.4 Kb)
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Title Full SNP dataset for 2 North American populations
Downloaded 6 times
Description This file contains SNP genotype data in genepop format (.gen) for 9864 loci from two blue crab populations : Agawam river MA (AR populatioN) and Panama City Beach, FL (PCB population). Genotype data were filtered for coverage and >85% genotypes called for individuals, and HWE, but not for linkage disequilibrium (LD). Data were exported from Stacks v.1.34 or above.
Download 10K_FLA_CH.gen (1.247 Mb)
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When using this data, please cite the original publication:

Plough LV (2017) Population genomic analysis of the blue crab Callinectes sapidus using genotyping-by-sequencing. Journal of Shellfish Research 36(1): 249-261. http://dx.doi.org/10.2983/035.036.0128

Additionally, please cite the Dryad data package:

Plough LV (2017) Data from: Population genomic analysis of the blue crab Callinectes sapidus using genotyping-by-sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c3318
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