Data from: Comparative analyses of plastid and AFLP data suggest different colonization history and asymmetric hybridisation between Betula pubescens and B. nana

Eidesen PB, Alsos IG, Brochmann C

Date Published: June 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.c3g80

 

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Title AFLPmatrix_original_B_nana
Downloaded 12 times
Description Binary AFLP matrix with 119 markers, 570 individuals of Betula nana and B. glandulosa generated by 3 primer combinations
Download BN_BG_570_119.txt (146.5 Kb)
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Title AFLPmatrix_orginal_Betula_pub_alle_332_155
Downloaded 5 times
Description Binary AFLP matrix with 155 markers, 332 individuals of mainly Betula pubescens, but also including reference species and hybrids generated by 3 primer combinations
Download BP_alle_332_155.txt (109.3 Kb)
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Title AFLPmatrix_Betula_all_901ind_104_markers_1primer
Downloaded 6 times
Description AFLP matrix based on the combined scoring of on primer in common among the original data sets for B. nana and B. pubescens and reference species
Download B_all_901_104.txt (204.6 Kb)
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Title AFLPmatrix_Betula_nana_only_528_115
Downloaded 4 times
Description Subset of the original AFLP matrix (3primers)nwithout populations of B. glandulosa, 115 polymorphic markers and 528 ind
Download BN_kun_528_115.txt (131.5 Kb)
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Title AFLP_matrix_Betula_pub_only_303_132
Downloaded 5 times
Description Subset of the original aflp matrix of B. pubescens, without reference populations-only including 303 individuals of B. pubescens, 3 primer combinations, 132 markers
Download BP_kun_303_132.txt (85.78 Kb)
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Title Betula_901_104structure-input
Downloaded 5 times
Description Input-file to STRUCTURE software based on the combined AFLP matrix with 901 individuals, 104 markers (one primer combination)
Download B_all_901_104structure-input.txt (401.2 Kb)
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Title Betula_pubescens_only_303_132_structure-input
Downloaded 5 times
Description Input file to the software program structure based on the aflp matrix only including populations of B. pubescens, 3 primers, 303 ind and 132 markers
Download BP_kun_structure-input.txt (107.9 Kb)
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Title Betula_nana_only_structure-input
Downloaded 3 times
Description Input file to the software program STRUCTURE based on the AFLP matrix only including B.nana ind(528) and 115 markers, 3 primer combinations
Download BN_kun_structure.txt (258.5 Kb)
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Title B_nana_only_pairwise_geographical_distance
Downloaded 5 times
Description Geographical distances among B. nana populations used for Mantel test
Download BN_kun_pairwise_geographical_distance.txt (25.02 Kb)
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Title B_pubescens_only_pairwise_geographical_distance
Downloaded 4 times
Description Geographical distances among B. pubescens populations used for Mantel test
Download BP_kun_pairwise_geographical_distance.txt (8.34 Kb)
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Title Betula_ssp_pop_marker_frq__1primer
Downloaded 4 times
Description AFLP marker frequencies per population based on the combined AFLP matrix . Used as inputfile for NJ-analyses among populations
Download B_all_pop_marker_frq__1primer.txt (47.57 Kb)
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Title Betula_pubescens_and ref_pop_marker_frq__3primers
Downloaded 8 times
Description AFLP marker frequencies per population based on the original B pubescens AFLP matrix (3 primers). Used as inputfile for NJ-analyses among populations
Download BP_pop_marker_frq__3primers.txt (33.63 Kb)
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Title trnS_trnG_Alignment_58seq
Downloaded 3 times
Description Alignment file for trnS-trnG region based on plastid sequences used to generate haplotypes
Download trnS_trnG_Alignment_58seq.gb (60.24 Kb)
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Title trnQ-rsp16_Alignment
Downloaded 4 times
Description Alignment of plastid sequences trmQ-rsp16
Download AlignmentQtrntrimmet.fas (36.76 Kb)
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When using this data, please cite the original publication:

Eidesen PB, Alsos IG, Brochmann C (2015) Comparative analyses of plastid and AFLP data suggest different colonization history and asymmetric hybridisation between Betula pubescens and B. nana. Molecular Ecology 24(15): 3993–4009. http://dx.doi.org/10.1111/mec.13289

Additionally, please cite the Dryad data package:

Eidesen PB, Alsos IG, Brochmann C (2015) Data from: Comparative analyses of plastid and AFLP data suggest different colonization history and asymmetric hybridisation between Betula pubescens and B. nana. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c3g80
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