Data from: Specificity and stability of the Acromyrmex-Pseudonocardia symbiosis

Andersen SB, Hansen LH, Sørensen SJ, Boomsma JJ

Date Published: April 23, 2013

DOI: http://dx.doi.org/10.5061/dryad.c4f03

 

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Title OTUclassification
Downloaded 25 times
Description Following 454 sequencing of the 16s rDNA region of bacterial communities of 59 samples of attine ants, 993 bacterial OTUs (operational taxonomic units) were identified. The file contains the taxonomic classification of these OTUs. Each OTU is denoted by a number (1-993), the number of reads contributing to the OTU and its taxonomic classification.
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Title ReadDistributionAllOTUs
Downloaded 11 times
Description Following 454 sequencing of the 16s rDNA region of bacterial communities of 59 samples of attine ants, 993 bacterial OTUs (operational taxonomic units) were identified. The file shows the distribution of sequencing reads for all OTUs across the 59 samples.
Download ReadDistributionAllOTUs.txt (126.2 Kb)
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Title Alignment
Downloaded 18 times
Description Following 454 sequencing of the 16s rDNA region of bacterial communities of 59 samples of attine ants, 35,063 unique sequences were identified after data quality check. The file contains the alignment of these sequences to a SILVA reference alignment (v.102 from www.mothur.org).
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Title RepSeqsOTUs
Downloaded 4 times
Description Following 454 sequencing of the 16s rDNA region of bacterial communities of 59 samples of attine ants, 993 bacterial OTUs (operational taxonomic units) were identified. The file contains the representative sequences for the 993 OTUs. Each sequence is denoted by a number (1-993) and the original name of the read.
Download RepSeqsOTUs.fasta (225.7 Kb)
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Title mothur commands
Downloaded 222 times
Description Commands used for analysis of 454 sequencing datasets NCBI Sequence Read Archive acc.no. SRA050635.2; 16S rDNA bacterial communities of attine ants. Analyses performed in mother following the Schloss SOP (mothur.org)
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When using this data, please cite the original publication:

Andersen SB, Hansen LH, Sørensen SJ, Boomsma JJ (2013) Specificity and stability of the Acromyrmex-Pseudonocardia symbiosis. Molecular Ecology 22(16): 4307-4321. http://dx.doi.org/10.1111/mec.12380

Additionally, please cite the Dryad data package:

Andersen SB, Hansen LH, Sørensen SJ, Boomsma JJ (2013) Data from: Specificity and stability of the Acromyrmex-Pseudonocardia symbiosis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c4f03
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