Data from: Effects of long term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

Lentendu G, Wubet T, Chatzinotas A, Wilhelm C, Buscot F, Schlegel M

Date Published: June 3, 2014

DOI: http://dx.doi.org/10.5061/dryad.c4s8s

 

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Title Trimmed_Subsampled_Reads
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Description Good quality reads for all six datasets.
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Title Pipeline_output_tables
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Description OTU matrices, taxonomic tables and phylogenetical distances matrices for all six datasets.
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Title cer.barcodes
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Description Barcodes labeling cercozoan sequences libraries.
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Title script_bioinformatic_analyses_cer
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Description Example bioinformatic pipeline to analyse the cercozoan dataset raw sequences.
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Title script_alternative_clustering_methods_cer
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Description Alternative methods to cluster sequences into OTUs.
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Title script_threshold_cer
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Description Example analysis to determine the clustering threshold approaching species level for a new barcoding marker.
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Title script_fig_cer
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Description Produce figure output of the previous script.
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Title script_diversity_statistics
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Description Main statistical analyses of diversity patterns.
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Title soil_parameters
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Description Additional measured soil parameters.
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Title script_cooccurence_analysis
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Description Identified non-random co-occurrences and exclusions among all six datasets OTUs.
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Title script_phyla_network
Downloaded 30 times
Description Identified non-random co-occurrences and exclusions among OTUs grouped at phylum level.
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Title bin
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Description Collection of bash and R scripts requested to execute the previous scripts.
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Title README
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Description Description of all files provided in this data package.
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When using this data, please cite the original publication:

Lentendu G, Wubet T, Chatzinotas A, Wilhelm C, Buscot F, Schlegel M (2014) Effects of long term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach. Molecular Ecology 23(13): 3341–3355. http://dx.doi.org/10.1111/mec.12819

Additionally, please cite the Dryad data package:

Lentendu G, Wubet T, Chatzinotas A, Wilhelm C, Buscot F, Schlegel M (2014) Data from: Effects of long term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c4s8s
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