Data from: Climatic niche evolution in the Andean genus Menonvillea (Cremolobeae: Brassicaceae)

Salariato DL, Zuloaga FO

Date Published: July 5, 2016

DOI: http://dx.doi.org/10.5061/dryad.c5271

 

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Title ITS alignment
Downloaded 3 times
Description Nuclear ribosomal ITS aligned matrix
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Title trnL-F alignment
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Description Chloroplast trnL-F aligned matrix
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Title trnH-psbA alignment
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Description Chloroplast trnH-psbA intergenic spacer aligned matrix
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Title rps16 intron alignment
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Description chloroplast rps16 intron aligned matrix
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Title BEAST species tree analyses
Downloaded 8 times
Description xml file for species tree analyses in BEAST v2.3.0 under the coalescent-based method implemented in *BEAST extension, using ribosomal ITS and three chloroplast DNA regions(trnL-F, trnH-psbA, rps16 intron), uncorrelated lognormal relaxed clock models, and two secondary calibrations under normal prior distributions.
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Title MCCT from species tree analyses
Downloaded 5 times
Description Maximum clade credibility species tree (MCCT) estimated in BEAST v2.3.0 from nuclear ribosomal ITS and three chloroplast DNA regions(trnL-F, trnH-psbA, rps16 intron) using the multispecies coalescent method implemented in *BEAST, uncorrelated lognormal relaxed clock models, and two secondary calibrations under normal prior distributions.
Download MCCT_species_tree_analyses.tre (45.10 Kb)
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Title 1000 trees from species tree analyses
Downloaded 3 times
Description 1000 randomly subsampled posterior trees from the Bayesian species tree analyses in BEAST v2.3.0 using ribosomal ITS and three chloroplast DNA regions(trnL-F, trnH-psbA, rps16 intron), the multispecies coalescent method implemented in *BEAST, uncorrelated lognormal relaxed clock models, and two secondary calibrations under normal prior distributions.
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Title BEAST concatenated analyses
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Description xml file for concatenated analyses in BEAST v2.3.0 under the concatenated method implemented in BEAST, using nuclear ribosomal ITS and three chloroplast DNA regions (trnL-F, trnH-psbA, rps16 intron), uncorrelated lognormal relaxed clock models, and two secondary calibrations under normal prior distributions.
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Title MCCT from concatenated analyses
Downloaded 4 times
Description Maximum clade credibility tree (MCCT) estimated in BEAST v2.3.0 from nuclear ribosomal ITS and three chloroplast DNA regions (trnL-F, trnH-psbA, rps16 intron) using the concatenated method, uncorrelated lognormal relaxed clock models, and two secondary calibrations under normal prior distributions.
Download MCCT_concatenated_analyses.tre (52.29 Kb)
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Title Materials and Methods for phylogenetic analyses
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Description Descriptions for all phylogenetic analyses conducted in this study
Download phylogenetic_analyses.docx (13.28 Kb)
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Title Species occurrence
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Description Species ocurrence data used in the niche analyses
Download Species_Ocurrence.xlsx (101.6 Kb)
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When using this data, please cite the original publication:

Salariato DL, Zuloaga FO (2016) Climatic niche evolution in the Andean genus Menonvillea (Cremolobeae: Brassicaceae). Organisms Diversity & Evolution 17(1): 11–28. http://dx.doi.org/10.1007/s13127-016-0291-5

Additionally, please cite the Dryad data package:

Salariato DL, Zuloaga FO (2016) Data from: Climatic niche evolution in the Andean genus Menonvillea (Cremolobeae: Brassicaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c5271
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