Data from: Accelerated rate of molecular evolution for vittarioid ferns is strong and not due to selection

Rothfels CJ, Schuettpelz E

Date Published: March 30, 2015

DOI: http://dx.doi.org/10.5061/dryad.c5m42.2

 

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Title codon_all_genes
Description Nexus file for the codon-based analyses.
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Title Dryad_BASEML_results_summary
Description Outputs from BASEML runs (part of the PAML package).
Download Dryad_BASEML_results_summary.xlsx (170.7 Kb)
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Title Dryad_CODEML_results_summary
Description Outputs from CODEML (part of the PAML package).
Download Dryad_CODEML_results_summary.xlsx (327.6 Kb)
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Title nucleotide_all_data
Description Nexus file for nucleotide-model based analyes (including a block of recoded indels).
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Title SI_Appendix1
Description PAMLparser, a Python script for organizing PAML outputs (from both CODEML and BASEML) and reformated them in tab-delimited files.
Download SI_Appendix1.doc (35.32 Kb)
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Title SI_Fig1
Description Phylogeny of the gapCp "retained clones." Includes gapC, gapCp "short," and gapCp "long" sequences.
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Title SI_Table1
Downloaded 1 time
Description Primers used in amplification and sequencing.
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Title SI_Table2
Description Voucher table and sequence data for the broad gapCp and gapC family sequences.
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Title SI Table 3
Download SI Table 3.docx (115.2 Kb)
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Title SI_Fig2
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Title SI_Fig3
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When using this data, please cite the original publication:

Rothfels CJ, Schuettpelz E (2013) Accelerated rate of molecular evolution for vittarioid ferns is strong and not due to selection. Systematic Biology 63(1): 31-54. http://dx.doi.org/10.1093/sysbio/syt058

Additionally, please cite the Dryad data package:

Rothfels CJ, Schuettpelz E (2013) Data from: Accelerated rate of molecular evolution for vittarioid ferns is strong and not due to selection. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c5m42.2
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