Data from: Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse

Smadja CM, Loire E, Caminade P, Thoma M, Latour Y, Roux C, Thoss M, Penn DJ, Ganem G, Boursot P

Date Published: July 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.c6jh2

 

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Title Primer_information
Downloaded 13 times
Description This file provides information for all primers used in this study.
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Title Behavioural data
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Description This file provides behavioural raw data (mate choice tests). In particular, it provides for each actor of the choice the individual IDs (sample_ID1 and sample_ID2), the subspecies of origin, the sex, the geographical origin (field "Sample"), the trapping site ID with its geographical coordinates (in degrees), the time spent sniffing each stimulus (musculus or domesticus urinary signals), and the difference in time spent sniffing the two stimuli.
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Title Genotyping_raw_data_main_experiment
Downloaded 18 times
Description This file provides all raw genotyping data for the main experiment (1248 loci). For each primer pair and sample, the different rows represent the different peaks present in the pool before any filtering was applied. For each peak, peak size, peak height and peak area is provided.
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Title Genotyping_raw_data_for_HI_estimation
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Description This file provides genotyping data of the 21 diagnostic markers (insertion/deletion polymorphisms of transposable elements, columns C to W) used to estimate the hybrid index of each individual used in this study. More information on the markers used and applied genotyping procedure can be found in Latour et al 2015 Proceeedings of the Royal Society of London.
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Title Genotyping_raw_data_pooling_validation_experiment
Downloaded 9 times
Description This file provides all genotyping raw data for the pooling strategy validation experiment. Sheet 1 shows individual raw genotypes (14 individuals typed separately) and sheet 2 shows the pool raw genotypes.
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Title Genotyping_raw_data_outlier_validation_experiment
Downloaded 11 times
Description This file provides raw genotyping results for individual typing of outlier microsatellite loci.
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When using this data, please cite the original publication:

Smadja CM, Loire E, Caminade P, Thoma M, Latour Y, Roux C, Thoss M, Penn DJ, Ganem G, Boursot P (2015) Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse. Molecular Ecology 24(16): 4222–4237. http://dx.doi.org/10.1111/mec.13301

Additionally, please cite the Dryad data package:

Smadja CM, Loire E, Caminade P, Thoma M, Latour Y, Roux C, Thoss M, Penn DJ, Ganem G, Boursot P (2015) Data from: Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.c6jh2
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