Data from: Genetic monitoring of open ocean biodiversity: an evaluation of DNA metabarcoding for processing continuous plankton recorder samples

Deagle BE, Clarke LJ, Kitchener JA, Polanowski AM, Davidson AT

Date Published: November 21, 2017

DOI: https://doi.org/10.5061/dryad.c75sj

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Title 1_CPR_DNA_sequences
Downloaded 12 times
Description DNA sequences (merged sequence text files in FASTA format) for each sample as well as various files (mostly .csv format) with information on the identity of samples, taxonomy assigned to OTUs, etc... needed for initial data processing. These files are called in the r code (1) below.
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Title 2_CPR_Final_Data
Downloaded 7 times
Description Summaries including DNA sequence counts for samples analysed in the paper and the taxa identified using morphology These files are called in the r code (2) below.
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Title R Code: 1_CPR_Read_in_Fasta_files
Downloaded 5 times
Description R code for initial processing of the DNA sequence data and assignment of taxonomic OTUs
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Download 1_CPR_Read_in_Fasta_files.r (10.93 Kb)
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Title R Code: 2_Paper_Analysis
Downloaded 10 times
Description R code for looking at the data in more detail and used to produce the plots for the paper
Download 2_Paper_Analysis.r (47.9 Kb)
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When using this data, please cite the original publication:

Deagle BE, Clarke LJ, Kitchener JA, Polanowski AM, Davidson AT (2017) Genetic monitoring of open ocean biodiversity: an evaluation of DNA metabarcoding for processing continuous plankton recorder samples. Molecular Ecology Resources, online in advance of print. https://doi.org/10.1111/1755-0998.12740

Additionally, please cite the Dryad data package:

Deagle BE, Clarke LJ, Kitchener JA, Polanowski AM, Davidson AT (2017) Data from: Genetic monitoring of open ocean biodiversity: an evaluation of DNA metabarcoding for processing continuous plankton recorder samples. Dryad Digital Repository. https://doi.org/10.5061/dryad.c75sj
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