Data from: Pushing the limits of photoreception in twilight conditions: the rod-like cone retina of the deep-sea pearlsides

de Busserolles F, Cortesi F, Helvik JV, Davies WIL, Templin RM, Sullivan RKP, Michell CT, Mountford JK, Collin SP, Irigoien X, Kaartvedt S, Marshall J

Date Published: November 14, 2017

DOI: https://doi.org/10.5061/dryad.c7p60

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Title Maurolicus_muelleri-1_SRX3161870_TrinityAssembly
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Description Trinity assembly of Maurolicus muelleri-1 eye transcriptome - 100bp PE Illumina HiSeq2000 run
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Title Maurolicus_muelleri-4_SRX3161914_TrinityAssembly
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Description Trinity assembly of Maurolicus muelleri-4 eye transcriptome - 100bp PE Illumina HiSeq2000 run
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Title Maurolicus_mucronatus-13_SRX3162896_TrinityAssembly
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Description Trinity assembly of Maurolicus mucronatus-13 eye transcriptome - 100bp PE Illumina HiSeq2000 run
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Title Maurolicus_mucronatus-14_SRX3162897_TrinityAssembly
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Description Trinity assembly of Maurolicus mucronatus-14 eye transcriptome - 100bp PE Illumina HiSeq2000 run
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Title Maurolicus_spp_OpsinDatasetAlignment
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Description Sequence alignment for gene coding region (CDS) inferred vertebrate opsin gene phylogeny
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Title Maurolicus_spp_OpsinTree_RAxML
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Description Gene coding region (CDS) inferred vertebrate opsin gene phylogeny based on a ML reconstruction in RAxML
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Title Maurolicus_spp_OpsinTree_GTRgamma
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Description Gene coding region (CDS) inferred vertebrate opsin gene phylogeny based on a Bayesian reconstruction using a GTR & g model
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Title Maurolicus_spp_GalphaTransducinDatasetAlignment
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Description Sequence alignment for the vertebrate Gα transducin gene phylogeny
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Title Maurolicus_spp_GalphaTransducinTree_RAxML
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Description Vertebrate Gα transducin gene phylogeny based on a ML reconstruction using RAxML
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Title Maurolicus_spp_GalphaTransducinTree_GTRgamma
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Description Vertebrate Gα transducin gene phylogeny based on a Bayesian reconstruction using a GTR & g model of sequence evolution
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Title Maurolicus_spp_ArrestinDatasetAlignment
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Description Sequence alignment for vertebrate arrestin gene phylogeny
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Title Maurolicus_spp_ArrestinTree_RAxML
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Description Vertebrate arrestin gene phylogeny based on a ML reconstruction using RAxML
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Title Maurolicus_spp_ArrestinTree_GTRgamma
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Description Vertebrate arrestin gene phylogeny based on a Bayesian reconstruction using a GTR & gamma model of sequence evolution
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Title Maurolicus_spp_OpsinGeneConversionDatasetAlignment
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Description Alignment for rh2 opsin gene conversion phylogeny
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Title Maurolicus_spp_OpsinGeneConversionTree_RAxML
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Description rh2 opsin gene conversion phylogeny based on a ML reconstruction using RAxML
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Title Maurolicus_spp_OpsinGeneConversionTree_GTRgamma
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Description rh2 opsin gene conversion phylogeny based on a Bayesian reconstruction using a GTR & gamma model of sequence evolution
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When using this data, please cite the original publication:

de Busserolles F, Cortesi F, Helvik JV, Davies WIL, Templin RM, Sullivan RKP, Michell CT, Mountford JK, Collin SP, Irigoien X, Kaartvedt S, Marshall J (2017) Pushing the limits of photoreception in twilight conditions: the rod-like cone retina of the deep-sea pearlsides. Science Advances 3(11): eaao4709. https://doi.org/10.1126/sciadv.aao4709

Additionally, please cite the Dryad data package:

de Busserolles F, Cortesi F, Helvik JV, Davies WIL, Templin RM, Sullivan RKP, Michell CT, Mountford JK, Collin SP, Irigoien X, Kaartvedt S, Marshall J (2017) Data from: Pushing the limits of photoreception in twilight conditions: the rod-like cone retina of the deep-sea pearlsides. Dryad Digital Repository. https://doi.org/10.5061/dryad.c7p60
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