Data from: Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification

Papadopoulou A, Knowles LL

Date Published: October 18, 2017

DOI: https://doi.org/10.5061/dryad.cc000

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Title Interspecific dataset of 35,585 SNPs for phylogenetic analyses
Downloaded 8 times
Description This dataset contains 35,585 putatively unlinked SNPs from 121 individuals, representing 16 populations and 7 Amphiacusta species. This dataset was used for species tree and phylogenetic analyses.
Download Amphiacusta_35585unlinkedSNPs.nex (4.307 Mb)
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Title Intraspecific dataset of Amphiacusta lares
Downloaded 5 times
Description Intraspecific dataset of Amphiacusta lares in vcf format, as exported from Stacks. This dataset was used for estimating genetic diversity and population differentiation, for assessing population structure and for demographic inference, after filtering the data and converting to appropriate input formats as described in the methods section of the manuscript.
Download Amphiacusta_lares.vcf (46.62 Mb)
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Title Intraspecific dataset of Amphiacusta pronauta
Downloaded 4 times
Description Intraspecific dataset of Amphiacusta pronauta in vcf format, as exported from Stacks. This dataset was used for estimating genetic diversity and population differentiation, for assessing population structure and for demographic inference, after filtering the data and converting to appropriate input formats as described in the methods section of the manuscript.
Download Amphiacusta_pronauta.vcf (46.54 Mb)
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Title Intraspecific dataset of Amphiacusta sanctaecrucis
Downloaded 1 time
Description Intraspecific dataset of Amphiacusta sanctaecrucis in vcf format, as exported from Stacks. This dataset was used for estimating genetic diversity and population differentiation, for assessing population structure and for demographic inference, after filtering the data and converting to appropriate input formats as described in the methods section of the manuscript.
Download Amphiacusta_sanctaecrucis.vcf (74.25 Mb)
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Title Interspecific dataset of 171,528 SNPs for species tree analyses
Downloaded 2 times
Description This dataset contains 171,528 putatively unlinked SNPs from 121 individuals, representing 16 populations and 7 Amphiacusta species. This dataset was used for species tree analyses.
Download Amphiacusta_171528unlinkedSNPs.nex (20.75 Mb)
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When using this data, please cite the original publication:

Papadopoulou A, Knowles LL (2017) Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification. Evolution 71(12): 2901-2917. https://doi.org/10.1111/evo.13384

Additionally, please cite the Dryad data package:

Papadopoulou A, Knowles LL (2017) Data from: Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification. Dryad Digital Repository. https://doi.org/10.5061/dryad.cc000
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