Data from: Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss

McKinney GJ, Hale MC, Goetz G, Gribskov M, Thrower FP, Nichols KM

Date Published: March 5, 2015

DOI: http://dx.doi.org/10.5061/dryad.ch264

 

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Title Full Trinity assembly
Downloaded 8 times
Description Full de novo Trinity assembly without filtering for read counts.
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Title Table S1
Downloaded 40 times
Description Number of total reads generated for each sample and number of read alignments to transcriptome.
Download TableS1.xlsx (9.797 Kb)
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Title Table S2
Downloaded 45 times
Description Raw read counts, statistical results and annotations from RNAseq expression and differential expression analysis, including EdgeR results for all genes (components) passing filtering for count thresholds.
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Title Table S3
Downloaded 40 times
Description Results from alignment of RNAseq genes to RADtags and the Oncorhynchus mykiss genome.
Download TableS3.xlsx (109.7 Kb)
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Title Table S4
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Description Results from qPCR validation of genes, and correlations between RNAseq expression and qPCR expression values.
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Title Table S5
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Description Results from Ingenuity Pathway Analysis pathway enrichment analysis.
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Title Table S6
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Description Results from Ingenuity Pathway Analysis biofunction enrichment analysis.
Download TableS6.xlsx (38.43 Kb)
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Title Filtered Trinity assembly
Downloaded 14 times
Description Contigs contained in the components that passed filtering for read counts, and ultimately used for differential gene expression analyses.
Download Omykiss_filteredTrinityassembly.fasta (627.5 Mb)
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When using this data, please cite the original publication:

McKinney GJ, Hale MC, Goetz G, Gribskov M, Thrower FP, Nichols KM (2015) Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss. Molecular Ecology 24(8): 1792-1809. http://dx.doi.org/10.1111/mec.13143

Additionally, please cite the Dryad data package:

McKinney GJ, Hale MC, Goetz G, Gribskov M, Thrower FP, Nichols KM (2015) Data from: Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ch264
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