Data from: Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity

King B, Lee MSY

Date Published: January 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.cj2fg

 

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Title Fig1 - Expanded pdf version
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Description Expanded pdf version of Figure 1 (main text), with name and reproductive state for each terminal taxon.
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Title Fig2 - Expanded pdf version
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Description Expanded pdf version of Figure 2 (main text), with name and reproductive state for each terminal taxon, and posterior probability of reconstructed state for each node.
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Title Figures S1 to S6 and captions
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Description Figures S1 to S6 and captions, in a single Word (docx) file.
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Title Tables_S1-S8 and captions
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Description Tables S1 to S8 and captions, in a single Word (docx) file.
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Title File S1 - BEAST executable file for Analysis 1
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Description BEAST file for Analysis 1 (focal analysis - see file S2). File is in xml format and runs on BEAST 1.8.x (not BEAST 2).
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Title File S2 - BEAST Random Local Clock settings
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Description BEAST Random Local Clock (RLC) settings for all analyses of the empirical data. Word (docx) format.
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Title File S3 - BEAST tree in Figtree format
Downloaded 21 times
Description BEAST consensus tree from Analysis 1 (focal analysis). This file can be opened in Figtree and will show estimated evolutionary rate (mean and 95% HPD), and posterior probability for reconstructed state, at each node.
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Title File S4 - R Code for Simulations
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Description R Code for simulations, in plain text file. See annotations for further description.
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Title File S5 - Results of simulations
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Description Full results of the 4 simulation scenarios (5 replicates each), in a pdf file (~98 MB).
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When using this data, please cite the original publication:

King B, Lee MSY (2015) Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity. Systematic Biology 64(3): 532-544. http://dx.doi.org/10.1093/sysbio/syv005

Additionally, please cite the Dryad data package:

King B, Lee MSY (2015) Data from: Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.cj2fg
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