Data from: Genome-wide association mapping of phenotypic traits subject to a range of intensities of natural selection in Timema cristinae

 

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Title Phenotypic measurements of Timema cristinae
Downloaded 39 times
Description File contains all the raw phenotypic measurements for all individuals included in the genome-wide association mapping analyses ("individual" begins with "FHA") and the same measurements for individuals collected from two additional populations ("individual" begins with "VPC" or "HVA").
Download Tcris_FHA_phenotypes.txt (32.91 Kb)
Download README.txt (1.552 Kb)
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Title Tcris_fin_mod_snpcntII.txt
Downloaded 70 times
Description File contains variant counts (snp calling) for each individual. This file was used to estimate genotype probabilities that were ultimately used to generate the composite genotypes (see "Tcris_pimass_composite_genotypes.txt" file for these) use in GWAS analyses carried out in piMASS.
Download Tcris_fin_mod_snpcntII.txt.zip (91.10 Mb)
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Title Tcris_pimass_composite_genotypes.txt
Downloaded 74 times
Description Input genotype file for piMASS. Contains composite genotypic values for each individual.
Download Tcris_pimass_composite_genotypes.txt.zip (96.41 Mb)
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Title Tcris_pimass_FHA_hiPIP_snp
Downloaded 8 times
Description File contains all snps (snp_id) with Rao-Blackwell posterior inclusion probabilities (PIP_rb) greater than 0.01 and includes the trait a given snp was associated with (trait) and the estimate of beta given by piMASS (B_rb).
Download Tcris_pimass_FHA_hiPIP_snp.csv (8.117 Kb)
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When using this data, please cite the original publication:

Comeault AA, Soria-Carrasco V, Gompert Z, Farkas TE, Buerkle CA, Parchman TL, Nosil P (2014) Genome-wide association mapping of phenotypic traits subject to a range of intensities of natural selection in Timema cristinae.The American Naturalist 183(5): 711-727. http://dx.doi.org/10.1086/675497

Additionally, please cite the Dryad data package:

Comeault AA, Soria-Carrasco V, Gompert Z, Farkas TE, Buerkle CA, Parchman TL, Nosil P (2014) Data from: Genome-wide association mapping of phenotypic traits subject to a range of intensities of natural selection in Timema cristinae. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ck2cm
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