Data from: Frugivory-related traits promote speciation of tropical palms

Onstein RE, Baker WJ, Couvreur TLP, Faurby S, Svenning J, Kissling WD

Date Published: October 23, 2017

DOI: https://doi.org/10.5061/dryad.cm4nm

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Title Palm functional traits as used in Onstein et al. NatEcolEvol
Downloaded 33 times
Description Trait data for 1774 palm species used in Onstein et al. "Frugivory-related traits promote speciation of tropical palms" published in Nature Ecology and Evolution. These traits include fruit size (binary, 1 = small fruits < 4 cm, 0 = large, megafaunal fruits > 4 cm), understory growth form (binary, 1 = understory growth form, 0 = non understory growth form, i.e. canopy), island distribution (binary, i.e. 1 = species occurs on oceanic or atoll island, 0 = species occurs on mainland or continental island), realm (binary, New World or Old World). These traits can be used to perform Binary State Speciation and Extinction (BiSSE) and Multiple State Speciation and Extinction (MuSSE) analyses as done in this study.
Download traits_Onstein_et_al.csv (61.76 Kb)
Download README.txt (791 bytes)
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Title BiSSE_script
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Description R script to perform the Binary State Speciation and Extinction (BiSSE) analysis as done in Onstein et al. "Frugivory-related traits promote speciation of tropical palms" published in Nature Ecology and Evolution.
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Title MuSSE_script
Downloaded 17 times
Description R script to perform the Multiple State Speciation and Extinction model (MuSSE multistate) analyses as done in Onstein et al. "Frugivory-related traits promote speciation of tropical palms" published in Nature Ecology and Evolution.
Download MuSSE_script.R (11.66 Kb)
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Title Palm MCC phylogenetic tree
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Description Palm (Arecaceae) Maximum Clade Credibility (MCC) phylogenetic tree based on data from Faurby, S., Eiserhardt, W. L., Baker, W. J. & Svenning, J.-C. An all-evidence species-level supertree for the palms (Arecaceae). Molecular Phylogenetics and Evolution 100, 57-69, doi:10.1016/j.ympev.2016.03.002 (2016). This tree was used in Onstein et al. "Frugivory-related traits promote speciation of tropical palms" published in Nature Ecology and Evolution and can be used to perform the BiSSE and MuSSE analyses.
Download TREE (1.739 Mb)
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Title Palm 100 phylogenetic trees
Downloaded 10 times
Description 100 palm (Arecaceae) trees from Faurby, S., Eiserhardt, W. L., Baker, W. J. & Svenning, J.-C. An all-evidence species-level supertree for the palms (Arecaceae). Molecular Phylogenetics and Evolution 100, 57-69, doi:10.1016/j.ympev.2016.03.002 (2016). These trees were used in Onstein et al. "Frugivory-related traits promote speciation of tropical palms" published in Nature Ecology and Evolution to perform the BiSSE and MuSSE analyses.
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When using this data, please cite the original publication:

Onstein RE, Baker WJ, Couvreur TLP, Faurby S, Svenning J, Kissling WD (2017) Frugivory-related traits promote speciation of tropical palms. Nature Ecology & Evolution 1(12): 1903-1911. https://doi.org/10.1038/s41559-017-0348-7

Additionally, please cite the Dryad data package:

Onstein RE, Baker WJ, Couvreur TLP, Faurby S, Svenning J, Kissling WD (2017) Data from: Frugivory-related traits promote speciation of tropical palms. Dryad Digital Repository. https://doi.org/10.5061/dryad.cm4nm
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