Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium)

Vargas OM, Ortiz EM, Simpson BB

Date Published: March 27, 2017

DOI: http://dx.doi.org/10.5061/dryad.cn74h

 

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Title Matrices and control files
Downloaded 3 times
Description Here we provide all the necessary files to run the analyses described in the paper. Files are organized by folders. dating_analysis -> control files necessary to run the dating analysis. ddrad_data -> Intermediate files from pyrad's steps 3 and 5, and matrices derived from the ddRAD method used for the phylogenetic and introgression analyses. genome_skimming_matrices -> matrices derived from genome skimming method used in the phylogenetic analyses. JML_analysis -> all the files used to run and visualize the JML analysis.
Download matrices_and_control_files.zip (168.0 Mb)
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Title read_subsets_1
Downloaded 5 times
Description Files with the subsets of reads used in the study Each subset is composed of three files. R1 indicates the first read, R2 indicates second read, SE indicates a single read (not paired, due to quality filtering). cp indicates chloroplast reads mt indicates mitochondrial reads nr indicates nuclear ribosomal reads
Download read_subsets_1.zip (816.1 Mb)
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Title read_subsets_2
Downloaded 3 times
Description Files with the subsets of reads used in the study Each subset is composed of three files. R1 indicates the first read, R2 indicates second read, SE indicates a single read (not paired, due to quality filtering). cp indicates chloroplast reads mt indicates mitochondrial reads nr indicates nuclear ribosomal reads
Download read_subsets_2.zip (710.5 Mb)
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Title read_subsets_3
Downloaded 3 times
Description Files with the subsets of reads used in the study Each subset is composed of three files. R1 indicates the first read, R2 indicates second read, SE indicates a single read (not paired, due to quality filtering). cp indicates chloroplast reads mt indicates mitochondrial reads nr indicates nuclear ribosomal reads
Download read_subsets_3.zip (711.2 Mb)
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Title read_subsets_4
Downloaded 3 times
Description Files with the subsets of reads used in the study Each subset is composed of three files. R1 indicates the first read, R2 indicates second read, SE indicates a single read (not paired, due to quality filtering). cp indicates chloroplast reads mt indicates mitochondrial reads nr indicates nuclear ribosomal reads
Download read_subsets_4.zip (800.9 Mb)
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Title read_subsets_5
Downloaded 4 times
Description Files with the subsets of reads used in the study Each subset is composed of three files. R1 indicates the first read, R2 indicates second read, SE indicates a single read (not paired, due to quality filtering). cp indicates chloroplast reads mt indicates mitochondrial reads nr indicates nuclear ribosomal reads
Download read_subsets_5.zip (788.3 Mb)
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Title read_subsets_6
Downloaded 1 time
Description Files with the subsets of reads used in the study Each subset is composed of three files. R1 indicates the first read, R2 indicates second read, SE indicates a single read (not paired, due to quality filtering). cp indicates chloroplast reads mt indicates mitochondrial reads nr indicates nuclear ribosomal reads
Download read_subsets_6.zip (669.3 Mb)
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When using this data, please cite the original publication:

Vargas OM, Ortiz EM, Simpson BB (2017) Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium). New Phytologist 214(4): 1736-1750. http://dx.doi.org/10.1111/nph.14530

Additionally, please cite the Dryad data package:

Vargas OM, Ortiz EM, Simpson BB (2017) Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.cn74h
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