Data from: Comparative developmental transcriptomics reveals rewiring of a highly conserved gene regulatory network during a major life history switch in the sea urchin genus Heliocidaris

Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA

Date Published: March 7, 2016

DOI: http://dx.doi.org/10.5061/dryad.cr0mb

 

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Title Trinity_Assemblies_Unmodified.tar
Downloaded 29 times
Description Unmodified Trinity assemblies for H. erythrogramma, H. tuberculata, and L. variegatus
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Title Trinity_Assemblies_Modified.tar
Downloaded 20 times
Description Modified Trinity assemblies for H. erythrogramma, H. tuberculata, and L. variegatus
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Title Fastq Files for L. variegatus, 4-cell stage
Downloaded 10 times
Description These are fastq files for L. variegatus, 4-cell stage. There are three replicates, each is 50 bp PE
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Title Fastq Files for L. variegatus, egg stage
Downloaded 10 times
Description These are fastq files for L. variegatus, egg stage. There are three replicates, each is 50 bp PE
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Title Fastq Files for L. variegatus, 16-cell stage
Downloaded 8 times
Description These are fastq files for L. variegatus, 16-cell stage. There are three replicates, two are 50 bp PE and one is 50bp SE
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Title Fastq Files for L. variegatus, 32-cell stage
Downloaded 10 times
Description These are fastq files for L. variegatus, 4-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for L. variegatus, blastula stage
Downloaded 16 times
Description These are fastq files for L. variegatus, blastula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for L. variegatus, gastrula stage
Downloaded 13 times
Description These are fastq files for L. variegatus, gastrula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
Download L.variegatus_Gastrula.tar.gz (8.939 Gb)
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Title Fastq Files for L. variegatus, prism "early larva" stage
Downloaded 9 times
Description These are fastq files for L. variegatus, prism "early larva" stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.tuberculata, egg stage
Downloaded 7 times
Description These are fastq files for H.tuberculata, egg stage. There are three replicates, each is 50 bp PE
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Title Fastq Files for H.tuberculata, 4-cell stage
Downloaded 7 times
Description These are fastq files for H.tuberculata, 4-cell stage. There are three replicates, each is 50 bp PE
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Title Fastq Files for H.tuberculata, 16-cell stage
Downloaded 7 times
Description These are fastq files for H.tuberculata, 16-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.tuberculata, 32-cell stage
Downloaded 7 times
Description These are fastq files for H.tuberculata, 32-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.tuberculata, blastula stage
Downloaded 10 times
Description These are fastq files for H.tuberculata, blastula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.tuberculata, gastrula stage
Downloaded 6 times
Description These are fastq files for H.tuberculata, gastrula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
Download H.tuberculata_gastrula.tar.gz (9.972 Gb)
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Title Fastq Files for H.tuberculata, prism "early larva" stage
Downloaded 8 times
Description These are fastq files for H.tuberculata, prism "early larva" stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
Download H.tuberculata_prism.tar.gz (8.008 Gb)
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Title Fastq Files for H.erythrogramma, egg stage
Downloaded 5 times
Description These are fastq files for H.erythrogramma, egg stage. There are three replicates, each is 50 bp PE
Download H.erythrogramma_egg.tar.gz (8.500 Gb)
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Title Fastq Files for H.erythrogramma, 4-cell stage
Downloaded 9 times
Description These are fastq files for H.erythrogramma, 4-cell stage. There are three replicates, each is 50 bp PE
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Title Fastq Files for H.erythrogramma, 16-cell stage
Downloaded 6 times
Description These are fastq files for H.erythrogramma, 16-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.erythrogramma, 32-cell stage
Downloaded 5 times
Description These are fastq files for H.erythrogramma, 32-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.erythrogramma, blastula stage
Downloaded 12 times
Description These are fastq files for H.erythrogramma, blastula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
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Title Fastq Files for H.erythrogramma, gastrula stage
Downloaded 12 times
Description These are fastq files for H.erythrogramma, gastrula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
Download H.erythrogramma_gastrula.tar.gz (9.234 Gb)
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Title Fastq Files for H.erythrogramma, prism "early larva" stage
Downloaded 15 times
Description These are fastq files for H.erythrogramma, prism "early larva" stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
Download H.erythrogramma_prism.tar.gz (8.032 Gb)
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Title S1_Data
Downloaded 16 times
Description Log2-transformed, normalized count data
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Title S2_Data
Downloaded 17 times
Description Mfuzz Data for cluster generation in L. variegatus, c=7
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Title S3_Data
Downloaded 11 times
Description Standardized, mean expression profiles of normalized, log2-transformed counts
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Title S4_Data
Downloaded 14 times
Description Jump scores
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Title S5_Data
Downloaded 11 times
Description Mfuzz Data for cluster generation in L. variegatus, c=5
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Title S6_Data
Downloaded 13 times
Description Mfuzz Data for cluster generation in L. variegatus, c=9
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When using this data, please cite the original publication:

Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA (2016) Comparative developmental transcriptomics reveals rewiring of a highly conserved gene regulatory network during a major life history switch in the sea urchin genus Heliocidaris. PLOS Biology 14(3): e1002391. http://dx.doi.org/10.1371/journal.pbio.1002391

Additionally, please cite the Dryad data package:

Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA (2016) Data from: Comparative developmental transcriptomics reveals rewiring of a highly conserved gene regulatory network during a major life history switch in the sea urchin genus Heliocidaris. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.cr0mb
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