Data from: "Transcriptome resources for two highly divergent Silene latifolia populations" in Genomic Resources Notes accepted 1 February 2015 – 31 March 2015

Fields P, Weingartner L, Delph L

Date Published: April 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.d0h71

 

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Title Annotation Summary
Downloaded 15 times
Description Summary of annotations generated using the Trinotate pipeline.
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Title meta_assembly.fasta
Downloaded 9 times
Description Trinity generated assembly of all four individuals pooled together in a gzipped fasta format.
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Title ZAG5_1.fasta.gz
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Description Trinity generated assembly of ZAG5_1 individual in a gzipped fasta format.
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Title ZAG2_1.fasta.gz
Downloaded 12 times
Description Trinity generated assembly of ZAG2_1 individual in a gzipped fasta format.
Download ZAG2_1.fasta.gz (41.26 Mb)
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Title CN9_1.fasta.gz
Downloaded 11 times
Description Trinity generated assembly of CN9_1 individual in a gzipped fasta format.
Download CN9_1.fasta.gz (37.27 Mb)
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Title CN7_1.fasta.gz
Downloaded 10 times
Description Trinity generated assembly of CN7_1 individual in a gzipped fasta format.
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Title blacklight_script.txt
Downloaded 8 times
Description List of commands used to conduct assembly of pooled transcriptome on Blacklight cluster.
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Title silene_transcriptomes.vcf.gz
Downloaded 10 times
Description Compressed vcf file containing snps identified in all four transcriptomes against Trinity derived pooled assembly as reference. PF01 = CN7_1, PF02 = ZAG2_1, PF03 = ZAG5_1, PF04 =CN9_1.
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Title Annotation_report.xls
Downloaded 10 times
Description Contains full description of assembly component annotation generated by Trinotate.
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Title analysis_scripts.txt
Downloaded 88 times
Description Commands used for conducting non-assembly based analysis.
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Arthofer W, Bertini L, Caruso C, Cicconard F, Delph LF, Fields PD, Ikeda M, Minegishi Y, Proietti S, Ritthammer H, Schlick-Steiner BC, Steiner FM, Wachter GA, Wagner HC, Weingartner LA (2015) "Transcriptome resources for two highly divergent Silene latifolia populations" in Genomic Resources Notes accepted 1 February 2015 – 31 March 2015. Molecular Ecology Resources 15(4): 1014-1015. http://dx.doi.org/10.1111/1755-0998.12419

Additionally, please cite the Dryad data package:

Fields P, Weingartner L, Delph L (2015) Data from: "Transcriptome resources for two highly divergent Silene latifolia populations" in Genomic Resources Notes accepted 1 February 2015 – 31 March 2015. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d0h71
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