Data from: The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes

 

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Title Oxytricha trifallax macronuclear PE-Assembler/SSAKE assembly
Downloaded 16 times
Description Contigs in gzipped fasta format.
Download s_all.fastq.high_qual.ssake_m20_o5_r0.8_t0...ts.gz (14.35 Mb)
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Title Oxytricha trifallax macronuclear IDBA assembly
Downloaded 15 times
Description Contigs in gzipped fasta format.
Download idba_pe_new45_85-contig-mate.fa.gz (16.82 Mb)
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Title Oxytricha trifallax macronuclear ABySS assembly
Downloaded 9 times
Download oxy-abyss-pese-50-contigs.fa.greater200.be...it.gz (20.59 Mb)
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Title Oxytricha trifallax macronuclear PCAP 2.1.8 assembly
Downloaded 9 times
Download PCAP_2.1.8_assembly.tar.gz (1.225 Gb)
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Title Oxytricha trifallax macronuclear genome fosmids
Downloaded 18 times
Download oxytricha_mac_fosmids.tar.gz (60.89 Mb)
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Title Stylonychia lemnae DDE_TNP_is1595 contigs
Downloaded 23 times
Description Contigs in fasta format.
Download stylonychia_dde_tnp_is1595_contigs.fa (998 bytes)
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When using this data, please cite the original publication:

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang W, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF (2013) The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. PLoS Biology 11(1): e1001473. http://dx.doi.org/10.1371/journal.pbio.1001473

Additionally, please cite the Dryad data package:

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang W, Bowen MS, Stover NA, Jones TA, Eddy SR, Doak TG, Herrick GA, Wilson RK, Mardis ER, Landweber LF (2013) Data from: The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d1013
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