Data from: Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens

Mitchell KJ, Wood JR, Llamas B, McLenachan PA, Kardailsky O, Scofield RP, Worthy TH, Cooper A

Date Published: June 15, 2016

DOI: http://dx.doi.org/10.5061/dryad.d18m1

 

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Title Traversia lyalli Sequence Data
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Description FASTQ file containing filtered, de-mulitplexed and collapsed MiSeq (Illumina) sequencing reads corresponding to the Traversia lyalli (S27777) enriched genomic library. See main publication for full details on data processing.
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Title Pachyplichas yaldwyni Sequence Data
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Description FASTQ file containing filtered, de-mulitplexed and collapsed MiSeq (Illumina) sequencing reads corresponding to the Pachyplichas yaldwyni (Av18213) enriched genomic library. See main publication for full details on data processing.
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Title Xenicus longipes Sequence Data
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Description FASTQ file containing filtered, de-mulitplexed and collapsed MiSeq (Illumina) sequencing reads corresponding to the Xenicus longipes (Av37320) enriched genomic library. See main publication for full details on data processing.
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Title BEAST_files
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Description BEAST files, including input .xml and final maximum clade credibility tree.
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Title Morphology_files
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Description Files for re-analysis of Worthy et al.'s (2010) morphological matrix, including .nex for PAUP* and MrBayes, and final trees.
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Title MrBayes_files
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Description MrBayes files, including input .nex and final tree.
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Title RAxML_files
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Description RAxML files, including input alignment & partition file and final tree.
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Title NGS_pipeline_scripts
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Description Scripts for analysis of high-throughput sequencing data.
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When using this data, please cite the original publication:

Mitchell KJ, Wood JR, Llamas B, McLenachan PA, Kardailsky O, Scofield RP, Worthy TH, Cooper A (2016) Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens. Molecular Phylogenetics and Evolution 102: 295–304. http://dx.doi.org/10.1016/j.ympev.2016.05.038

Additionally, please cite the Dryad data package:

Mitchell KJ, Wood JR, Llamas B, McLenachan PA, Kardailsky O, Scofield RP, Worthy TH, Cooper A (2016) Data from: Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d18m1
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