Data from: Joined at the hip: linked characters and the problem of missing data in studies of disparity

Smith AJ, Rosario MV, Eiting TP, Dumont ER

Date Published: April 16, 2014

DOI: http://dx.doi.org/10.5061/dryad.d380g

 

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Title AnalyzeData
Downloaded 17 times
Description Contains the functions to run the correction factor and data removal scripts.
Download AnalyzeData.R (2.656 Kb)
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Title CorrectionFunctions.Source
Downloaded 14 times
Description The source file read by AnalyzeData that contains all the functions for calculating the correction factor.
Download CorrectionFunctions.Source.R (48.29 Kb)
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Title Ordination-Disparity.Source
Downloaded 12 times
Description The source file read by AnalyzeData that contains all the functions for calculating the ordination spaces and disparity analysis following data removal.
Download Ordination-Disparity.Source.R (26.61 Kb)
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Title Luo2007Example
Downloaded 6 times
Description An example data file to use with the correction factor script. Data from Luo et al. 2007.
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Title PCOMatrixExample
Downloaded 6 times
Description An example PCO data file that the correction factor outputs. To be used with the t-test function.
Download PCOMatrixExample.csv (10.10 Kb)
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Title LuoMatrixExtant
Downloaded 9 times
Description Example extant dataset used in the data removal component of the study.
Download LuoMatrixExtant.csv (23.12 Kb)
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Title LuoMatrixExtinct
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Description Example extinct dataset used in the linkage data removal component of the study.
Download LuoMatrixExtinct.txt (68.58 Kb)
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Title LuoMatrixExtinctRandom
Downloaded 6 times
Description Example extinct dataset used in the random data removal component of the study.
Download LuoMatrixExtinctRandom.txt (68.58 Kb)
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Title PCO_All
Downloaded 32 times
Description Differences between original and 'data removed' ordination spaces for all taxa datasets.
Download PCO_All.xlsx (242.7 Kb)
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Title Linkage_All
Downloaded 32 times
Description Disparity metric outputs following linkage data removal for all taxa datasets.
Download Linkage_All.xlsx (450.1 Kb)
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Title Random_All
Downloaded 64 times
Description Disparity metric outputs following random data removal for all taxa datasets.
Download Random_All.xlsx (450.5 Kb)
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Title Disparity_TTest
Downloaded 29 times
Description T-test results for mammals and pterosaurs for all disparity metrics. The test examines disparity differences between adjacent time bins.
Download Disparity_TTest.xlsx (42.26 Kb)
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Title FunctionDocumentation
Downloaded 35 times
Description Instructions on how to use the R scripts. Contains detailed information on each function used by correction factor.
Download FunctionDocumentation.pdf (214.9 Kb)
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When using this data, please cite the original publication:

Smith AJ, Rosario MV, Eiting TP, Dumont ER (2014) Joined at the hip: linked characters and the problem of missing data in studies of disparity. Evolution 68(8): 2386-2400. http://dx.doi.org/10.1111/evo.12435

Additionally, please cite the Dryad data package:

Smith AJ, Rosario MV, Eiting TP, Dumont ER (2014) Data from: Joined at the hip: linked characters and the problem of missing data in studies of disparity. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d380g
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